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Thread: *New* Ancient-Eurasia K10 DIY calculator

  1. #1
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    *New* Ancient-Eurasia K10 DIY calculator

    INTRODUCTION

    This is my new DIY calculator, based on the new data from Lazaridis et al. (2016), including Natufian hunter-gatherers, PPNB and Iranian Neolithic samples.

    - 10 components
    - 1148 samples
    - 54698 SNPs
    - genotyping rate >0.99

    Fst distances between components:


    DESCRIPTION OF THE COMPONENTS

    NAME ANCIENT PEAK MODERN PEAK
    AHG (African Hunter-Gatherer) Mota San (Namibia)
    WHG (Western Hunter-Gatherer) WHGs Estonians, Lithuanians
    Papuan - Papuans, Aboriginal Australians
    South_Indian - Pulliyar, etc.
    CHG (Caucasus Hunter-Gatherer) Kotias, Satsurblia, Neolithic Iranians Iranians
    Neo_African - Yoruba, South Sudanese
    Amerindian Anzick, Kennewick Karitiana
    LHG (Levant Hunter-Gatherer) Natufians, PPNB farmers Bedouins, Saudi
    Anatolian_Farmer Neolithic Anatolians Sardinians
    East_Eurasian - Han Chinese

    __________________________________________________ __________________________________________________ _______________________________

    The spreadsheet should be ready soon. Meanwhile, here you can see some results:


    The calculator files are here -> https://www.dropbox.com/sh/i1a874fdb...CBs9F3lja?dl=0
    DIYDodecad can be downloaded here -> http://dodecad.blogspot.it/2011/09/d...ecad-v-21.html
    Last edited by Passa; 07-03-2016 at 12:56 PM.

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  3. #2
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    Could you also show the results of Neolithic levantines and Bronze age ones?

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  5. #3
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    ----------------------------
    FINAL ADMIXTURE PROPORTIONS:
    ----------------------------

    0.01% AHG
    6.87% WHG
    0.01% Papuan
    34.76% South_Indian
    40.76% CHG
    0.02% Neo_African
    2.44% Amerindian
    5.75% LHG
    7.15% Anatolian_Farmer
    2.24% East_Eurasian

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  7. #4
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    Mine

    0.00% AHG
    3.09% WHG
    0.34% Papuan
    0.40% South_Indian
    26.31% CHG
    8.85% Neo_African
    0.14% Amerindian
    36.12% LHG
    23.87% Anatolian_Farmer
    0.87% East_Eurasian
    Lifeisdandy's


    1.29% AHG
    1.05% WHG
    0.06% Papuan
    0.00% South_Indian
    24.19% CHG
    9.71% Neo_African
    0.00% Amerindian
    37.89% LHG
    24.96% Anatolian_Farmer
    0.84% East_Eurasian

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    ----------------------------
    FINAL ADMIXTURE PROPORTIONS:
    ----------------------------

    1.25% AHG
    0.02% WHG
    1.29% Papuan
    0.01% South_Indian
    8.05% CHG
    41.66% Neo_African
    0.02% Amerindian
    38.16% LHG
    8.11% Anatolian_Farmer
    1.45% East_Eurasian

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  11. #6
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    My results:

    28.30% Anatolian_Farmer
    27.98% CHG
    17.69% LHG
    15.60% WHG
    9.10% Neo_African
    1.27% South_Indian
    0.05% Amerindian
    0.00% AHG
    0.00% Papuan
    0.00% East_Eurasian

    Mother (South French):

    34.30% CHG
    34.15% Anatolian_Farmer
    22.96% WHG
    8.12% LHG
    0.29% Amerindian
    0.18% South_Indian
    0.00% AHG
    0.00% Papuan
    0.00% Neo_African
    0.00% East_Eurasian

    Algerian:

    28.94% LHG
    24.94% Anatolian_Farmer
    20.91% Neo_African
    17.75% CHG
    6.39% WHG
    0.57% AHG
    0.47% Amerindian
    0.04% South_Indian
    0.00% Papuan
    0.00% East_Eurasian

    AlgerianJew:

    31.62% CHG
    29.64% Anatolian_Farmer
    27.15% LHG
    6.78% WHG
    3.84% Neo_African
    0.47% Papuan
    0.38% East_Eurasian
    0.11% Amerindian
    0.01% South_Indian
    0.00% AHG

    Portuguese:

    33.74% Anatolian_Farmer
    30.31% CHG
    19.80% WHG
    11.49% LHG
    3.60% Neo_African
    0.64% East_Eurasian
    0.39% Papuan
    0.03% South_Indian
    0.00% AHG
    0.00% Amerindian

    It seems CHG is a bit high in all samples...
    G25 Davidski's Ancient scaled
    Distance: 2.6158% R5P
    50.6 Anatolia_Barcin_N
    26.6 Yamnaya
    11.9 Taforalt
    5.8 WHG
    5.1 Yoruba


    Distance: 3.7712% / 0.03771193
    48.0 Anatolia_N
    24.6 Yamnaya
    17.2 Taforalt
    6.8 WHG
    3.4 IRN_N


    G25 scaled:Hidden Content Hidden Content Hidden Content
    Commercial:Hidden Content Hidden Content Hidden Content


    "The history of the people of Europe has not ended -- it never will. Ethnogenesis is a process of the present and future as much as it is the past.", P.Geary

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  13. #7
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    Yeah was just about to say, seems like the CHG is being overestimated

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  15. #8
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    Quote Originally Posted by rz1706 View Post
    It seems CHG is a bit high in all samples...
    That is because that component has ANE in it, I think. Here are the results of Afontova Gora 2, for example:

    WHG 45.72%
    CHG 37.43%
    Amerindian 15.05%
    AHG 1.78%

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  17. #9
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    Ayyubid Dynasty Zand Dynasty Ararat Republic Mahabad Republic Kurdistan Rojavaya Kurdistane
    Code:
      0.65%  AHG                 
      6.43%  WHG                 
        -    Papuan              
      8.29%  South_Indian        
     45.10%  CHG                 
        -    Neo_African         
      0.43%  Amerindian          
     16.58%  LHG                 
     22.49%  Anatolian_Farmer    
      0.04%  East_Eurasian
    E-M84>FGC18389>FGC18413>FGC18401>FGC18422>Y99171 tMRCA 2550ybp

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  19. #10
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    MfA, could you please post more Kurdish results if you have access to their genomes? I did not include them in my dataset.

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