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Thread: MDLP K12 beta

  1. #141
    Registered Users
    Posts
    101
    Sex

    К12
    Basal-Eurasian: 24.2749%
    ANE-Yamnaya: 19.9250%
    Early-Neolithic: 16.0283%
    Middle-Neolithic: 12.9995%
    WHG: 10.7816%
    ANE-Siberian: 5.5581%
    East-Aasian: 4.1965%
    Oceanian: 2.1361%
    Native-American: 1.6209%
    African: 1.2598%
    ASI: 0.9446%
    Arhaic-Man: 0.2747%
    Last edited by Macura; 06-25-2015 at 02:36 PM.

  2. The Following User Says Thank You to Macura For This Useful Post:

     Varun R (06-29-2015)

  3. #142
    Registered Users
    Posts
    745
    Sex
    Location
    Estonia
    Ethnicity
    Belarusian
    Y-DNA (P)
    I2-A1328
    mtDNA (M)
    J1c

    Quote Originally Posted by Dr_McNinja View Post
    ANE-Siberian and Middle Neolithic were the same component or had duplicates in two other components?
    They duplicated 2 other components

  4. #143
    Registered Users
    Posts
    168
    Location
    USA
    Ethnicity
    south asian
    Y-DNA (P)
    R1a1a
    mtDNA (M)
    M3

    Are there any instructions on how to run this?

  5. #144
    Gold Class Member
    Posts
    456
    Sex
    Location
    Elegant Decay
    Ethnicity
    Brahmin Mixed S India
    Nationality
    American
    Y-DNA (P)
    R1a1a1b2a1a (Y7+)
    mtDNA (M)
    M5a2a

    United States of America India Myanmar
    7.71% Early-Neolithic
    4.77% Middle-Neolithic
    2.96% WHG
    21.80% Basal-Eurasian
    3.77% ANE-Siberian
    18.24% East-Aasian
    4.51% Native-American
    0.41% Arhaic-Man
    4.50% African
    8.71% Oceanian
    3.96% ASI
    18.66% ANE-Yamnaya

    ModOracle(c(7.71,4.77,2.96,21.80,3.77,18.24,4.51,0 .41,4.50,8.71,3.96,18.66))
    [,1] [,2]
    [1,] "GujaratiA_GIH" "3.0135"
    [2,] "Brahmins_UP" "3.3294"
    [3,] "Kshatriya" "3.7194"
    [4,] "GujaratiB_GIH" "3.8797"
    [5,] "GujaratiD_GIH" "4.216"
    [6,] "GujaratiC_GIH" "4.551"
    [7,] "Burusho" "4.5784"
    [8,] "Sindhi" "5.0409"
    [9,] "Pashtun" "5.2695"
    [10,] "Pathan" "5.3119"
    [11,] "Punjabi_Lahore_PJL" "5.5495"
    [12,] "Kanjars" "5.7507"

    ModOracle(c(7.71,4.77,2.96,21.80,3.77,18.24,4.51,0 .41,4.50,8.71,3.96,18.66),k=20,mixedmode=T)
    [,1] [,2]
    [1,] "82.3% Velamas + 17.7% HungaryGamba_IA" "1.8091"
    [2,] "62.4% GujaratiA_GIH + 37.6% GujaratiD_GIH" "2.0362"
    [3,] "71.6% GujaratiA_GIH + 28.4% Velamas" "2.0488"
    [4,] "87.8% GujaratiD_GIH + 12.2% HungaryGamba_IA" "2.1339"
    [5,] "91.2% GujaratiD_GIH + 8.8% Bell_Beaker_LN" "2.2147"
    [6,] "81.3% GujaratiA_GIH + 18.7% Sakilli" "2.2495"
    [7,] "66.4% Kol + 33.6% Lezgins" "2.2793"
    [8,] "92.5% GujaratiD_GIH + 7.5% HungaryGamba_BA" "2.2807"
    [9,] "15.5% English_Cornwall_GBR + 84.5% GujaratiD_GIH" "2.2922"
    [10,] "82.2% GujaratiA_GIH + 17.8% Piramalai_Kallars" "2.3069"
    [11,] "88.5% Velamas + 11.5% BenzigerodeHeimburg_LN" "2.3221"
    [12,] "96.9% GujaratiA_GIH + 3.1% Botocudo" "2.3271"
    [13,] "76.9% GujaratiA_GIH + 23.1% Muslim" "2.33"
    [14,] "78.3% GujaratiA_GIH + 21.7% Kurumba" "2.343"
    [15,] "72.9% GujaratiA_GIH + 27.1% Punjabi_Lahore_PJL" "2.3663"
    [16,] "87.3% Velamas + 12.7% Bell_Beaker_LN" "2.3837"
    [17,] "16.2% Gond + 83.8% GujaratiA_GIH" "2.3874"
    [18,] "78.5% GujaratiA_GIH + 21.5% Kol" "2.3945"
    [19,] "92.4% GujaratiD_GIH + 7.6% BenzigerodeHeimburg_LN" "2.4172"
    [20,] "16.8% Chamar + 83.2% GujaratiA_GIH" "2.4176"
    Last edited by Varun R; 06-30-2015 at 12:30 AM. Reason: Fixed the Problem =)

  6. #145
    Registered Users
    Posts
    816
    Sex
    Location
    Grand Genève
    aDNA Match (1st)
    Iberia_Southeast_c.10-16CE:I7425
    aDNA Match (2nd)
    Iberia_West_Monteda_Nora:R10491___AD_832
    aDNA Match (3rd)
    Levant_LBN_MA_o1:SI-41_Crusader
    Y-DNA (P)
    E-M81->CTS12227
    mtDNA (M)
    I3a1 (Steppe)

    European Union
    31.20% Basal-Eurasian
    18.45% Early-Neolithic
    15.38% ANE-Yamnaya
    11.63% Middle-Neolithic
    7.70% WHG
    6.65% African
    2.98% East-Aasian
    1.84% ANE-Siberian
    1.51% Oceanian
    1.06% Native-American
    0.89% Arhaic-Man
    0.70% ASI

    [1,] Spanish_Extremadura_IBS 6.1828
    [2,] Spanish_Baleares_IBS 6.5211
    [3,] Corsican 6.5408
    [4,] Toscani 6.8016
    [5,] Sicilian 7.0023
    [6,] North_Greek 7.1621
    [7,] Italian_Piedmont 7.1914
    [8,] Italian_Abruzzo 7.2984
    [9,] Greek_Comas 7.3587
    [10,] Greek 7.4415
    [11,] Italian_WestSicilian 7.5494
    [12,] Kosovar 7.6143
    [13,] Ashkenazy_Jews 7.6554
    [14,] South_Greek 7.6722
    [15,] Portugese 7.6759
    [16,] Italian_Tuscan 7.6836
    [17,] Greek_WGA 7.6927
    [18,] Bulgarian 7.8689
    [19,] Maltese 7.9393
    [20,] Spaniards 8.0503

    [1,] 16.3% BedouinA + 83.7% Spanish_Extremadura_IBS 4.2224
    [2,] 26.9% BedouinA + 73.1% French_Basque 4.4824
    [3,] 5.5% BedouinB + 94.5% Spanish_Extremadura_IBS 4.5515
    [4,] 5.7% Bedouin + 94.3% Spanish_Extremadura_IBS 4.575
    [5,] 13.4% Saudis + 86.6% Spanish_Extremadura_IBS 4.6473
    [6,] 22.2% Egyptian_Comas + 77.8% Spanish_Extremadura_IBS 4.6751
    [7,] 83.5% Spanish_Extremadura_IBS + 16.5% Yemenite_Jew 4.6844
    [8,] 24.7% Jordanian + 75.3% Spanish_Extremadura_IBS 4.7152
    [9,] 75.3% Spanish_Extremadura_IBS + 24.7% Tunisian 4.748
    [10,] 37.1% Egyptian_Comas + 62.9% French_Basque 4.7971
    [11,] 21% Egyptans + 79% Spanish_Extremadura_IBS 4.8303
    [12,] 16% BedouinA + 84% Spanish_Baleares_IBS 4.8317
    [13,] 84.6% Spanish_Extremadura_IBS + 15.4% Tygray 4.8959
    [14,] 32.9% Moroccan_Jew + 67.1% Spanish_Extremadura_IBS 4.926
    [15,] 59.3% French_Basque + 40.7% Tunisian 4.9349
    [16,] 13.4% Ethiopians + 86.6% Spanish_Extremadura_IBS 4.9432
    [17,] 24% Lebanese + 76% Spanish_Extremadura_IBS 4.9747
    [18,] 25.7% Georgian_Jews + 74.3% Spanish_Extremadura_IBS 4.9874
    [19,] 21.9% Iraqi_Jew + 78.1% Spanish_Extremadura_IBS 4.9896
    [20,] 75.6% Spanish_Extremadura_IBS + 24.4% Syrian 4.9986

  7. The Following User Says Thank You to E_M81_I3A For This Useful Post:

     Varun R (07-23-2015)

  8. #146
    Registered Users
    Posts
    432
    Sex
    Nationality
    American
    Y-DNA (P)
    R1b-L21
    mtDNA (M)
    H1b

    United States of America
    15.84% Early-Neolithic
    12.40% Middle-Neolithic
    10.57% WHG
    22.18% Basal-Eurasian
    7.11% ANE-Siberian
    2.49% East-Aasian
    1.55% Native-American
    0.88% Arhaic-Man
    2.24% African
    1.26% Oceanian
    1.13% ASI
    22.35% ANE-Yamnaya

    [1,] "English_Cornwall_GBR" "6.6877"
    [2,] "English_Kent_GBR" "7.4479"
    [3,] "British" "7.5336"
    [4,] "Icelandic" "7.6232"
    [5,] "Czech" "8.0558"
    [6,] "Welsh" "8.0753"
    [7,] "Norwegian" "8.0949"
    [8,] "CEU" "8.2621"
    [9,] "Orcadian" "8.3262"
    [10,] "German" "8.4322"

    [1,] "76.2% Spanish_Castilla_la_Mancha_IBS + 23.8% Bell_Beaker_LN"
    [2,] "80.4% Spanish_Castilla_la_Mancha_IBS + 19.6% BenzigerodeHeimburg_LN"
    [3,] "89.3% Basque_Spanish + 10.7% Yamnaya"
    [4,] "89.7% French_Basque + 10.3% Yamnaya"
    [5,] "79.6% Croat + 20.4% Bell_Beaker_LN"
    [6,] "83.4% English_Kent_GBR + 16.6% Bell_Beaker_LN"
    [7,] "78.5% Occitan + 21.5% Bell_Beaker_LN"
    [8,] "89.4% Basque_Spanish + 10.6% Unetice_EBA_relative_of_I0117"
    [9,] "77.9% Croat_BH + 22.1% Bell_Beaker_LN"
    [10,] "89.8% French_Basque + 10.2% Unetice_EBA_relative_of_I0117"
    Last edited by SwampThing27; 07-17-2015 at 04:17 AM.
    Known ancestry: English, French, German, Dutch

  9. The Following 2 Users Say Thank You to SwampThing27 For This Useful Post:

     randwulf (07-16-2015),  Varun R (07-23-2015)

  10. #147
    Registered Users
    Posts
    168
    Location
    USA
    Ethnicity
    south asian
    Y-DNA (P)
    R1a1a
    mtDNA (M)
    M3

    Early-Neolithic 6.06
    Middle-Neolithic 4.65
    WHG 3.92
    Basal-Eurasian 22.95
    ANE-Siberian 3.19
    East-Aasian 18.93
    Native-American 5.15
    Arhaic-Man 0.28
    African 3.6
    Oceanian 10.17
    ASI 4.1
    ANE-Yamnaya 17.01

  11. The Following User Says Thank You to ashwinb For This Useful Post:

     Varun R (07-23-2015)

  12. #148
    Registered Users
    Posts
    1,956
    Sex
    Location
    Republic of Moldova
    Ethnicity
    Moldovan or Romanian
    Y-DNA (P)
    I-PH908*, DYS561=15
    mtDNA (M)
    T2a1b1a

    Moldova Romania European Union
    Why am I not clustering with the Eastern European bros?

    Admixture:

    24.72% Basal-Eurasian
    19.06% ANE-Yamnaya
    14.77% Early-Neolithic
    12.39% Middle-Neolithic
    10.74% WHG
    5.94% ANE-Siberian
    4.63% East-Aasian
    3.00% Native-American
    1.52% Oceanian
    1.28% ASI
    1.12% African
    0.83% Arhaic-Man


    Single mode population:

    [1,] "Croat" "5.2115"
    [2,] "English_Kent_GBR" "5.2983"
    [3,] "Occitan" "5.3894"
    [4,] "French" "5.5445"
    [5,] "Czech" "5.5637"
    [6,] "Spanish_Castilla_la_Mancha_IBS" "5.6322"
    [7,] "Croat_BH" "5.7984"
    [8,] "English_Cornwall_GBR" "5.8547"
    [9,] "Serb_BH" "5.8589"
    [10,] "Hungarians" "5.9519"
    [11,] "Hungarian_Coriell" "5.9824"
    [12,] "Croatian" "5.9978"
    [13,] "Serb_Serbia" "6.1244"
    [14,] "CEU" "6.2163"
    [15,] "German" "6.2601"
    [16,] "Welsh" "6.2602"
    [17,] "British" "6.3671"
    [18,] "Bosnian" "6.5254"
    [19,] "Spanish_Cantabria_IBS" "6.5326"
    [20,] "Icelandic" "6.5391"

    Mixed mode population:

    [1,] "92% Spanish_Castilla_la_Mancha_IBS + 8% Samara_HG" "3.6737"
    [2,] "92.7% Spanish_Castilla_la_Mancha_IBS + 7.3% Karelia_HG" "3.9394"
    [3,] "94.9% French + 5.1% Karsdorf_LN" "4.0086"
    [4,] "92.6% Croat + 7.4% Baalberge_MN" "4.019"
    [5,] "94.9% French + 5.1% AG2" "4.1376"
    [6,] "90.9% Spanish_Castilla_la_Mancha_IBS + 9.1% BenzigerodeHeimburg_LN" "4.1678"
    [7,] "89.2% Spanish_Castilla_la_Mancha_IBS + 10.8% Bell_Beaker_LN" "4.2179"
    [8,] "95.9% Croat + 4.1% Karsdorf_LN" "4.2247"
    [9,] "95.8% English_Kent_GBR + 4.2% Karsdorf_LN" "4.2596"
    [10,] "47.8% English_Cornwall_GBR + 52.2% Spanish_Castilla_la_Mancha_IBS" "4.2676"
    [11,] "93.6% Spanish_Castilla_la_Mancha_IBS + 6.4% MA1" "4.2819"
    [12,] "95% Spanish_Castilla_la_Mancha_IBS + 5% Yamnaya" "4.2913"
    [13,] "92.3% Spanish_Castilla_la_Mancha_IBS + 7.7% Unetice_EBA" "4.3037"
    [14,] "95% Spanish_Castilla_la_Mancha_IBS + 5% AG2" "4.3068"
    [15,] "94.1% Spanish_Castilla_la_Mancha_IBS + 5.9% Corded_Ware_LN" "4.3375"
    [16,] "94% Croat + 6% Starcevo_EN" "4.3469"
    [17,] "93.2% English_Kent_GBR + 6.8% Baalberge_MN" "4.356"
    [18,] "95.1% Spanish_Castilla_la_Mancha_IBS + 4.9% Unetice_EBA_relative_of_I0117" "4.3712"
    [19,] "85% Norwegian + 15% Stuttgart" "4.3839"
    [20,] "96.1% Croat + 3.9% AG2" "4.3891"
    Last edited by Dorkymon; 08-02-2015 at 04:24 PM.

  13. #149
    Banned
    Posts
    349
    Sex
    Location
    USA
    Ethnicity
    Mostly West European
    Nationality
    American
    Y-DNA (P)
    R1b-U106 (Father)
    mtDNA (M)
    H1J2A

    United States of America United Kingdom England Scotland Germany Belgium
    It looks like the Eurogenes K13 results were closer for you population-wise although the distances are a little high:

    Least-squares method.

    Using 1 population approximation:
    1 Serbian @ 4.601385
    2 Moldavian @ 5.699784

  14. The Following User Says Thank You to AnnieD For This Useful Post:

     Dorkymon (08-03-2015)

  15. #150
    Registered Users
    Posts
    13
    Sex
    Location
    Miami and London
    Ethnicity
    Euro-Bermudian
    Nationality
    British/Australian
    Y-DNA (P)
    I1
    mtDNA (M)
    T2b3

    Australia Spain Bermuda Bermuda United Kingdom United States of America
    ----------------------------
    FINAL ADMIXTURE PROPORTIONS:
    ----------------------------

    15.34% Early-Neolithic
    11.14% Middle-Neolithic
    11.09% WHG
    24.02% Basal-Eurasian
    2.32% ANE-Siberian
    5.21% East-Aasian
    5.62% Native-American
    0.88% Arhaic-Man
    3.08% African
    1.13% Oceanian
    1.08% ASI
    19.09% ANE-Yamnaya

    Code:
     [1,] "Croat"                "3.62"  
     [2,] "English_Kent_GBR"     "3.6979"
     [3,] "Czech"                "4.1498"
     [4,] "CEU"                  "4.1643"
     [5,] "French"               "4.171" 
     [6,] "English_Cornwall_GBR" "4.2122"
     [7,] "Hungarian_Coriell"    "4.2801"
     [8,] "Hungarians"           "4.3122"
     [9,] "Welsh"                "4.3826"
    [10,] "Croatian"             "4.6087"
    [11,] "German"               "4.6713"
    [12,] "Slovak"               "4.7996"
     
     [1,] "83.6% Corsican + 16.4% Karelia_HG"               "2.365" 
     [2,] "83.2% Corsican + 16.8% Samara_HG"                "2.3752"
     [3,] "89.6% Spaniards + 10.4% Karelia_HG"              "2.379" 
     [4,] "87.7% Spanish_Extremadura_IBS + 12.3% Samara_HG" "2.419" 
     [5,] "88% Spanish_Extremadura_IBS + 12% Karelia_HG"    "2.4604"
     [6,] "97.4% English_Kent_GBR + 2.6% Athabascan"        "2.4788"
     [7,] "97.4% English_Kent_GBR + 2.6% Birnirk"           "2.4788"
     [8,] "97.4% English_Kent_GBR + 2.6% Clovis"            "2.4788"
     [9,] "97.4% English_Kent_GBR + 2.6% Thule"             "2.4788"
    [10,] "94% French + 6% MA1"                             "2.5729"
    [11,] "97.3% English_Kent_GBR + 2.7% Saqqaq"            "2.5775"
    [12,] "86.2% Spanish_Baleares_IBS + 13.8% Karelia_HG"   "2.5816"
    Last edited by Neacal; 08-17-2015 at 11:36 AM.

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