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Thread: Genetic Genealogy & Ancient DNA in the News (TITLES/ABSTRACTS ONLY)

  1. #1611
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    R1a > M198 > YP 1337

    Poland
    Samples will be on Gedmatch for few minutes.
    Last edited by lukaszM; 10-24-2017 at 01:53 PM.

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  3. #1612
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    Elegant Decay
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    mtDNA (M)
    M5a2a

    United States of America India Myanmar
    https://m.economictimes.com/news/sci...w/61203159.cms

    Some good news from India while we wait for aDNA

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  5. #1613
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    R1a > M198 > YP 1337

    Poland
    Quote Originally Posted by lukaszM View Post
    Samples will be on Gedmatch for few minutes.
    The thing is I converted (using PLINK, also I use R method by Anglesqueville because of different format in snp names column) and uploaded random moderns :
    Pole1 - Z642805
    English1 - Z590212

    And they look normal.

    But WEZ samples have only few dozens SNPs in 23&me format. I tested Natufian ancient from this dataset and also the same problem. Somebody knows what's the problem? There is shitload of no-calls.
    Last edited by lukaszM; 10-24-2017 at 01:57 PM.

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  7. #1614
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    R1a > M198 > YP 1337

    Poland
    Last edited by lukaszM; 10-24-2017 at 01:53 PM.

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  9. #1615
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    Iím not understanding the significance of this graph. Is it to do with the huge Bronze Age battlefield find from Germany? If so what does the graph imply? Thanks

  10. #1616
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    Poland
    Quote Originally Posted by lukaszM View Post
    The thing is I converted (using PLINK, also I use R method by Anglesqueville because of different format in snp names column) and uploaded random moderns :
    Pole1 - Z642805
    English1 - Z590212

    And they look normal.

    But WEZ samples have only few dozens SNPs in 23&me format. I tested Natufian ancient from this dataset and also the same problem. Somebody knows what's the problem? There is shitload of no-calls.
    Hmm, some are better coveraged. I inspected files visually before, but it's better than I thought, but still not ideal

    WEZ15 ("Austrian" on PCA) - kit Z468191

    Eurogenes K36

    Basque 5.76
    East_Balkan 9.71
    East_Central_Euro 31.35
    Eastern_Euro 9.18
    Fennoscandian 9.31
    French 7.02
    Iberian 18.04
    North_Atlantic 1.42
    North_Sea 3.64
    Volga-Ural 2.71
    West_Med 1.86


    22123 SNPs used in this evaluation




    WEZ58 ("Polish-Norwegian" on PCA) - Kit Number: Z594501

    Eurogenes K36

    Arabian 0.66
    Basque 10.67
    Central_Euro 7.74
    East_Balkan 13.70
    East_Central_Euro 19.94
    East_Med 1.82
    Eastern_Euro 4.57
    Fennoscandian 8.51
    French 4.94
    Iberian 3.60
    North_Atlantic 13.71
    North_Sea 7.71
    Volga-Ural 2.42


    8444 SNPs
    used in this evaluation
    Last edited by lukaszM; 10-24-2017 at 02:22 PM.

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  12. #1617
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    R1a > M198 > YP 1337

    Poland
    WEZ15
    Kit Z468191

    MDLP K16
    Code:
    Admix Results (sorted):
    
    #	Population	Percent
    1 	NorthEastEuropean 	33.1
    2 	Neolithic 	30.62
    3 	Steppe 	25.94
    4 	Caucasian 	10.34
    
    Single Population Sharing:
    
    #	Population (source)	Distance
    1 	Icelandic (Iceland) 	5.6
    2 	Norwegian (Norwegia) 	5.96
    3 	Orcadian (Orkney_Islands) 	6.66
    4 	Scottish (Argyll_bute) 	7.69
    5 	English (Kent) 	8.41
    6 	English (Cornwall) 	8.57
    7 	Swede (Sweden) 	8.76
    8 	Irish (Ulster) 	9.1
    9 	Shetlandic (Shetland_Islands) 	9.18
    10 	Irish (Connacht) 	9.45
    11 	Scottish (Highlands) 	9.81
    12 	Irish (Cork_Kerry) 	9.84
    13 	Irish (Leinster) 	10.12
    14 	Scottish (Borders) 	10.19
    15 	Irish (Munster) 	10.25
    16 	Scottish (Dumfries_Galloway) 	10.42
    17 	French (WestFrance) 	10.44
    18 	Finn (WestFinland) 	10.62
    19 	Scottish (Grampian) 	10.64
    20 	English (England) 	10.66
    
    Mixed Mode Population Sharing:
    
    #	 	Primary Population (source) 	Secondary Population (source) 	Distance
    1	  	69.6%	Latvian_Dobele (Dobele) 	+ 	30.4%	Basque (France) 	@ 	3.69
    2	  	68.1%	Estonian (Estonia) 	+ 	31.9%	Basque (France) 	@ 	4.32
    3	  	63.8%	Latvian_Cesis (Cesis) 	+ 	36.2%	Basque (Spain) 	@ 	4.48
    4	  	64.8%	Latvian_Dobele (Dobele) 	+ 	35.2%	Spanish (Pais_Vasco) 	@ 	4.48
    5	  	68.7%	Latvian (Latvia) 	+ 	31.3%	Basque (France) 	@ 	4.49
    6	  	63.6%	Latvian_Cesis (Cesis) 	+ 	36.4%	Basque (France) 	@ 	4.6
    7	  	64.7%	Latvian_Dobele (Dobele) 	+ 	35.3%	French (SouthFrance) 	@ 	4.7
    8	  	90.4%	Icelandic (Iceland) 	+ 	9.6%	Basque (Spain) 	@ 	4.79
    9	  	66.4%	Lithuanian (Lithuania) 	+ 	33.6%	Basque (France) 	@ 	4.82
    10	  	90.7%	Icelandic (Iceland) 	+ 	9.3%	Basque (France) 	@ 	4.87
    11	  	89.5%	Icelandic (Iceland) 	+ 	10.5%	Spanish (Pais_Vasco) 	@ 	5.01
    12	  	90.4%	Icelandic (Iceland) 	+ 	9.6%	French (SouthFrance) 	@ 	5.13
    13	  	63.2%	Estonian (Estonia) 	+ 	36.8%	Spanish (Pais_Vasco) 	@ 	5.14
    14	  	90.1%	Norwegian (Norwegia) 	+ 	9.9%	Basque (France) 	@ 	5.17
    15	  	89%	Norwegian (Norwegia) 	+ 	11%	Spanish (Pais_Vasco) 	@ 	5.35
    16	  	58.1%	Latvian_Cesis (Cesis) 	+ 	41.9%	Spanish (Pais_Vasco) 	@ 	5.37
    17	  	63.9%	Latvian (Latvia) 	+ 	36.1%	Spanish (Pais_Vasco) 	@ 	5.38
    18	  	63.1%	Estonian (Estonia) 	+ 	36.9%	French (SouthFrance) 	@ 	5.38
    19	  	89.9%	Norwegian (Norwegia) 	+ 	10.1%	French (SouthFrance) 	@ 	5.48
    20	  	95.7%	Icelandic (Iceland) 	+ 	4.3%	Spanish (Aragon) 	@ 	5.54
    Eurogenes K15
    Code:
    #	Population	Percent
    1 	Baltic 	31.26
    2 	Atlantic 	26.63
    3 	North_Sea 	14.81
    4 	Eastern_Euro 	13.54
    5 	West_Med 	12.41
    6 	Oceanian 	1.3
    7 	South_Asian 	0.05
    
    Single Population Sharing:
    
    #	Population (source)	Distance
    1 	Russian_Smolensk 	12.93
    2 	Polish 	13
    3 	South_Polish 	13.48
    4 	Estonian_Polish 	13.58
    5 	Belorussian 	13.91
    6 	Croatian 	14.01
    7 	Ukrainian 	14.9
    8 	Ukrainian_Lviv 	14.98
    9 	Austrian 	15.53
    10 	Southwest_Russian 	15.88
    11 	Lithuanian 	15.96
    12 	Ukrainian_Belgorod 	16.1
    13 	East_German 	16.9
    14 	Hungarian 	17.2
    15 	Estonian 	17.6
    16 	Moldavian 	17.81
    17 	La_Brana-1 	18.87
    18 	Southwest_Finnish 	18.95
    19 	Kargopol_Russian 	19.83
    20 	Finnish 	20.46
    
    Mixed Mode Population Sharing:
    
    #	 	Primary Population (source) 	Secondary Population (source) 	Distance
    1	  	68.4%	Lithuanian 	+ 	31.6%	French_Basque 	@ 	6.89
    2	  	63.4%	Lithuanian 	+ 	36.6%	Southwest_French 	@ 	8.11
    3	  	73.4%	Belorussian 	+ 	26.6%	French_Basque 	@ 	8.28
    4	  	74.2%	Estonian_Polish 	+ 	25.8%	French_Basque 	@ 	8.34
    5	  	67.2%	Lithuanian 	+ 	32.8%	Spanish_Aragon 	@ 	8.66
    6	  	76.6%	Russian_Smolensk 	+ 	23.4%	French_Basque 	@ 	8.88
    7	  	66.3%	Lithuanian 	+ 	33.7%	Spanish_Cantabria 	@ 	9.03
    8	  	69.9%	Estonian_Polish 	+ 	30.1%	Southwest_French 	@ 	9.12
    9	  	66.5%	Lithuanian 	+ 	33.5%	Spanish_Valencia 	@ 	9.12
    10	  	69%	Belorussian 	+ 	31%	Southwest_French 	@ 	9.13
    11	  	67.4%	Lithuanian 	+ 	32.6%	Spanish_Andalucia 	@ 	9.17
    12	  	67.5%	Lithuanian 	+ 	32.5%	Spanish_Castilla_La_Mancha 	@ 	9.2
    13	  	73.8%	Estonian_Polish 	+ 	26.2%	Spanish_Aragon 	@ 	9.55
    14	  	72.8%	Russian_Smolensk 	+ 	27.2%	Southwest_French 	@ 	9.6
    15	  	73.1%	Belorussian 	+ 	26.9%	Spanish_Aragon 	@ 	9.65
    16	  	73.1%	Estonian_Polish 	+ 	26.9%	Spanish_Cantabria 	@ 	9.8
    17	  	66.3%	Lithuanian 	+ 	33.7%	Spanish_Castilla_Y_Leon 	@ 	9.81
    18	  	72.2%	Belorussian 	+ 	27.8%	Spanish_Cantabria 	@ 	9.86
    19	  	73.4%	Estonian_Polish 	+ 	26.6%	Spanish_Valencia 	@ 	9.86
    20	  	74.3%	Estonian_Polish 	+ 	25.7%	Spanish_Andalucia 	@ 	9.93

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  14. #1618
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    Y-DNA (P)
    R1a > M198 > YP 1337

    Poland
    WEZ58

    Kit Z594501


    MDLP K16 2xOracle and OracleX4
    Code:
    
    Admix Results (sorted):
    
    #	Population	Percent
    1 	Neolithic 	31.46
    2 	NorthEastEuropean 	30.18
    3 	Steppe 	21.61
    4 	Caucasian 	13.51
    5 	NearEast 	3.24
    
    Single Population Sharing:
    
    #	Population (source)	Distance
    1 	English (Kent) 	5.74
    2 	Norwegian (Norwegia) 	6.01
    3 	Icelandic (Iceland) 	6.24
    4 	Orcadian (Orkney_Islands) 	6.31
    5 	English (Cornwall) 	6.45
    6 	Shetlandic (Shetland_Islands) 	6.56
    7 	Irish (Ulster) 	6.66
    8 	Scottish (Highlands) 	6.89
    9 	Irish (Connacht) 	6.9
    10 	Scottish (Borders) 	6.92
    11 	French (WestFrance) 	6.93
    12 	Swede (Sweden) 	7.18
    13 	Scottish (Dumfries_Galloway) 	7.33
    14 	Scottish (Argyll_bute) 	7.38
    15 	Irish (Leinster) 	7.4
    16 	Irish (Cork_Kerry) 	7.46
    17 	Scottish (Grampian) 	7.66
    18 	Scottish (Fife) 	7.76
    19 	Irish (Munster) 	7.8
    20 	English (England) 	7.81
    
    Mixed Mode Population Sharing:
    
    #	 	Primary Population (source) 	Secondary Population (source) 	Distance
    1	  	59.1%	Lithuanian (Lithuania) 	+ 	40.9%	Spanish (Pais_Vasco) 	@ 	3.14
    2	  	58.7%	Lithuanian (Lithuania) 	+ 	41.3%	French (SouthFrance) 	@ 	3.33
    3	  	65.6%	Lithuanian (Lithuania) 	+ 	34.4%	Basque (France) 	@ 	3.45
    4	  	60.5%	Latvian (Latvia) 	+ 	39.5%	French (SouthFrance) 	@ 	3.51
    5	  	60.9%	Latvian (Latvia) 	+ 	39.1%	Spanish (Pais_Vasco) 	@ 	3.56
    6	  	60.6%	Latvian_Dobele (Dobele) 	+ 	39.4%	French (SouthFrance) 	@ 	3.77
    7	  	59.5%	Estonian (Estonia) 	+ 	40.5%	French (SouthFrance) 	@ 	3.8
    8	  	63.8%	Russians-West (WestRussian) 	+ 	36.2%	Basque (Spain) 	@ 	3.82
    9	  	60%	Estonian (Estonia) 	+ 	40%	Spanish (Pais_Vasco) 	@ 	3.84
    10	  	61.1%	Latvian_Dobele (Dobele) 	+ 	38.9%	Spanish (Pais_Vasco) 	@ 	3.87
    11	  	57%	Russians-West (WestRussian) 	+ 	43%	Spanish (Pais_Vasco) 	@ 	3.89
    12	  	62.5%	Belarusian (Belarus) 	+ 	37.5%	Spanish (Pais_Vasco) 	@ 	3.97
    13	  	68.8%	Belarusian (Belarus) 	+ 	31.2%	Basque (France) 	@ 	3.99
    14	  	55.1%	Latvian_Dobele (Dobele) 	+ 	44.9%	Spanish (Aragon) 	@ 	4.02
    15	  	67.5%	Latvian (Latvia) 	+ 	32.5%	Basque (France) 	@ 	4.06
    16	  	63.7%	Russians-West (WestRussian) 	+ 	36.3%	Basque (France) 	@ 	4.08
    17	  	88%	Icelandic (Iceland) 	+ 	12%	Sardinian (Sardinia) 	@ 	4.14
    18	  	55.1%	Latvian_Cesis (Cesis) 	+ 	44.9%	Spanish (Pais_Vasco) 	@ 	4.16
    19	  	67.4%	Belarusian (Zhytkavichy_Homel) 	+ 	32.6%	French (SouthFrance) 	@ 	4.2
    20	  	88.9%	Norwegian (Norwegia) 	+ 	11.1%	Sardinian (Sardinia) 	@ 	4.23

    Eurogenes EUtest V2 K15 Oracle results:
    Code:
    Admix Results (sorted):
    
    #	Population	Percent
    1 	Atlantic 	26.71
    2 	North_Sea 	26.59
    3 	Baltic 	23.55
    4 	Eastern_Euro 	10.14
    5 	West_Med 	5.76
    6 	East_Med 	4.3
    7 	Amerindian 	1.87
    8 	Siberian 	1.08
    
    Single Population Sharing:
    
    #	Population (source)	Distance
    1 	East_German 	9.67
    2 	Southwest_Finnish 	9.99
    3 	Austrian 	10.61
    4 	Hungarian 	11.4
    5 	North_German 	11.77
    6 	South_Polish 	12.87
    7 	Polish 	12.92
    8 	Finnish 	12.97
    9 	North_Swedish 	13.48
    10 	Croatian 	13.65
    11 	South_Dutch 	13.78
    12 	Swedish 	14
    13 	Danish 	14.19
    14 	Ukrainian_Lviv 	14.22
    15 	North_Dutch 	14.43
    16 	Ukrainian 	14.48
    17 	La_Brana-1 	14.58
    18 	Estonian 	14.85
    19 	Irish 	14.91
    20 	Norwegian 	15.21
    
    Mixed Mode Population Sharing:
    
    #	 	Primary Population (source) 	Secondary Population (source) 	Distance
    1	  	56.1%	Southeast_English 	+ 	43.9%	Lithuanian 	@ 	6.24
    2	  	56.9%	Irish 	+ 	43.1%	Lithuanian 	@ 	6.24
    3	  	52.5%	Irish 	+ 	47.5%	Belorussian 	@ 	6.36
    4	  	51.7%	Southeast_English 	+ 	48.3%	Belorussian 	@ 	6.53
    5	  	51.1%	Irish 	+ 	48.9%	Russian_Smolensk 	@ 	6.62
    6	  	55.1%	Southwest_English 	+ 	44.9%	Lithuanian 	@ 	6.7
    7	  	53.6%	Irish 	+ 	46.4%	Estonian_Polish 	@ 	6.71
    8	  	55.3%	West_Scottish 	+ 	44.7%	Lithuanian 	@ 	6.74
    9	  	50.8%	West_Scottish 	+ 	49.2%	Belorussian 	@ 	6.81
    10	  	64.8%	North_German 	+ 	35.2%	Lithuanian 	@ 	6.83
    11	  	54.8%	Polish 	+ 	45.2%	Irish 	@ 	6.89
    12	  	50.3%	Southeast_English 	+ 	49.7%	Russian_Smolensk 	@ 	6.93
    13	  	69.5%	Estonian 	+ 	30.5%	French_Basque 	@ 	6.93
    14	  	50.6%	Southwest_English 	+ 	49.4%	Belorussian 	@ 	6.95
    15	  	52.9%	Southeast_English 	+ 	47.1%	Estonian_Polish 	@ 	6.97
    16	  	50.7%	Russian_Smolensk 	+ 	49.3%	West_Scottish 	@ 	7
    17	  	59.7%	South_Dutch 	+ 	40.3%	Lithuanian 	@ 	7
    18	  	60.7%	North_German 	+ 	39.3%	Belorussian 	@ 	7.02
    19	  	65.9%	Estonian 	+ 	34.1%	Spanish_Aragon 	@ 	7.12
    20	  	55.7%	Polish 	+ 	44.3%	Southeast_English 	@ 	7.16

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  16. #1619
    Moderator
    Posts
    6,752
    Sex
    Location
    Normandy
    Ethnicity
    northwesterner
    Y-DNA (P)
    R-BY3604-Z275
    mtDNA (M)
    H5a1

    Normandie Netherlands Friesland Finland Orkney
    Lukasz, everything looks normal on the PLINK file, but actually many 23&me snps are no-calls for the WEZ samples ( at least for those I tried: WEZ15 and WEZ51). Unable to tell why.
    En North alom, de North venom
    En North fum naiz, en North manom

    (Roman de Rou, Wace, 1160-1170)

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  18. #1620
    Banned
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    Ethnicity
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    Y-DNA (P)
    R1a > M198 > YP 1337

    Poland
    Quote Originally Posted by anglesqueville View Post
    Lukasz, everything looks normal on the PLINK file, but actually many 23&me snps are no-calls for the WEZ samples ( at least for those I tried: WEZ15 and WEZ51). Unable to tell why.
    Yes, some are very low-ceveraged like WZ83

    Z174495

    Basque 4.77
    East_Central_Euro 17.82
    Iberian 10.40
    Italian 2.24
    North_Atlantic 3.54
    North_Sea 41.85
    Oceanian 0.80
    Volga-Ural 18.58

    5702 SNPs used in this evaluation

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