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Thread: List of ancient samples on GEDmatch

  1. #21
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    Quote Originally Posted by Tomenable View Post
    Yamnaya/Afanasievo/Poltavka/Catacomb samples:

    Gedmatch kit / culture and sample:

    M828815 / Yamnaya-RISE552
    M655536 / Yamnaya-I0231
    M343758 / Yamnaya-I0443
    F999968 / Yamnaya-RISE548
    F999942 / Afanasievo-RISE509
    M828784 / Afanasievo-RISE511
    M766878 / Poltavka-I0440
    F999946 / Catacomb-RISE552

    Middle-Late Bronze Age Steppe samples:

    Gedmatch kit / culture and sample:

    M690970 / Sintashta-RISE386
    M277797 / Sintashta-RISE395
    M608028 / Andronovo-RISE505
    F999947 / Andronovo-RISE500
    F999961 / Andronovo-RISE503
    M472767 / Srubnaya-I0232
    M217196 / Srubnaya-I0430
    I made a comparison of these samples in GedrosiaK12 and EurasiaK14 calculators:

    http://s15.postimg.org/i0j40q2xn/Ged...K12_Steppe.png



    http://s16.postimg.org/xktrcr9px/Eurasia_K14_Steppe.png



    Graphs:

    http://s11.postimg.org/wo3d4i5wj/Ged...K14_graphs.png

    Last edited by Tomenable; 09-30-2016 at 02:50 AM. Reason: graphs added

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  3. #22
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    Main difference in EurogenesK15 is much more of "Atlantic" for Sintashta etc. than for Yamnaya etc.

    This "Atlantic" is strange, because both Mesolithic HG and Early Neolithic Anatolian Farmers score it.

    Anatolian and Early European Farmers score a lot of "West Med & "East Med". Steppe people do not.

    Samara & Karelia EHG don't score "Atlantic", but share "North Sea", "Baltic" & "East Euro" with WHG.

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  5. #23
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    I uploaded RISE489 - Remedello Culture, Italy (2908-2578 BC)

    Gedmatch ID is T135721
    Paternal: R1b-U152+ L2+ ZZ48+ FGC10543+, Pietro della Rocca, b. 1559, Agira, Sicily, Italy
    Maternal: Haplogroup H4a1-T152C!, Maria Coto, b. ~1864, Asturias, Spain
    Mother's Paternal: Haplogroup J1+ FGC4745/FGC4766+ PF5019+, Gerardo Caprio, b. 1879, Caposele, Avellino, Campania, Italy
    Father's Maternal: Haplogroup T2b-C150T, Francisca Santa Cruz, b.1916, Garganchon, Burgos, Spain

    Avatar: Raetian bronze votive, Fritzens-Sanzeno Culture VI-V c. BC, Trentino-Alto Adige/Südtirol, Italy

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  7. #24
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    Quote Originally Posted by R.Rocca View Post
    I uploaded RISE489 - Remedello Culture, Italy (2908-2578 BC)

    Gedmatch ID is T135721
    Eurogenes EUtest V2 K15 Oracle results:
    Kit T135721

    Admix Results (sorted):

    # Population Percent
    1 West_Med 55.26
    2 Atlantic 32.55
    3 North_Sea 6.21
    4 East_Med 5.98

    Single Population Sharing:

    # Population (source) Distance
    1 Sardinian 15.6
    2 Spanish_Andalucia 31.22
    3 French_Basque 31.3
    4 Spanish_Aragon 31.34
    5 Spanish_Cantabria 31.45
    6 Southwest_French 31.75
    7 Spanish_Castilla_La_Mancha 32.04
    8 Spanish_Valencia 32.65
    9 Spanish_Extremadura 33.9
    10 Spanish_Murcia 34.26
    11 Portuguese 34.52
    12 Spanish_Castilla_Y_Leon 34.59
    13 Spanish_Cataluna 35.01
    14 North_Italian 35.09
    15 Spanish_Galicia 35.28
    16 Tuscan 38.38
    17 West_Sicilian 41.8
    18 French 42.14
    19 Greek 43.4
    20 Italian_Abruzzo 43.84

    Mixed Mode Population Sharing:

    # Primary Population (source) Secondary Population (source) Distance
    1 82.8% Sardinian + 17.2% French_Basque @ 14.5
    2 94.3% Sardinian + 5.7% Southwest_French @ 15.51
    3 95% Sardinian + 5% Spanish_Aragon @ 15.5


    .................................................. ............................

    puntDNAL K10 Ancient Oracle results:
    puntDNAL K10 Ancient Oracle

    Kit T135721

    Admix Results (sorted):

    # Population Percent
    1 ENF 54.27
    2 WHG 44.6
    3 CHG 1.04
    4 Beringian 0.1

    Single Population Sharing:

    # Population (source) Distance
    1 Sardinian 8.13
    2 Basque_Spanish 17.08
    3 Spanish_Southwest 17.99
    4 Spanish_Northeast 19.43
    5 Italian_North 24.81
    6 Italian_South 26.88
    7 Tuscan 27.31
    8 French 27.89
    9 Sicilian 29.13
    10 Albanian 30.61
    11 Greek 31.92
    12 German_South 32.11
    13 Bulgarian 32.57
    14 Croatian 34.01
    15 Utahn_white 34.48
    16 Ashkenazi_Jew 34.52
    17 Moroccan 35.36
    18 Sephardic_Jew 35.74
    19 English_South 35.79
    20 Irish 36.32

    Mixed Mode Population Sharing:

    # Primary Population (source) Secondary Population (source) Distance
    1 71.6% Sardinian + 28.4% Basque_Spanish @ 4.88


    I did not expect anything other than sardinian
    Last edited by vettor; 10-01-2016 at 02:01 AM.

    Father's Mothers Ydna ......R-S22778 ........Merlengo Veneto
    Father's Mtdna .....T2b35.......1735 Porcellengo Veneto Italy
    Wife's Ydna ..........R-DF99
    Sons Mtdna .....K1a4 ...........1710 Carnic Alps

    My Path = ( K-M9+, TL-P326+, T-M184+, L490+, M70+, PF5664+, L131+, L446+, CTS933+, CTS54+, CTS8862+, Z19945+, A339+ )

    The main negatives = ( M193-, P322-, P327-, Pages11- , L25- , CTS1848- )

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  9. #25
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    Quote Originally Posted by vettor View Post
    Eurogenes EUtest V2 K15 Oracle results:
    Kit T135721

    Mixed Mode Population Sharing:

    # Primary Population (source) Secondary Population (source) Distance
    1 71.6% Sardinian + 28.4% Basque_Spanish @ 4.88
    [/COLOR]

    I did not expect anything other than sardinian
    Yeah, and others still deny the link between I2a1-M26, Paleo-Sardinia, Proto-Basque being the pre-Bell Beaker makeup of almost all of Italy and Iberia.
    Paternal: R1b-U152+ L2+ ZZ48+ FGC10543+, Pietro della Rocca, b. 1559, Agira, Sicily, Italy
    Maternal: Haplogroup H4a1-T152C!, Maria Coto, b. ~1864, Asturias, Spain
    Mother's Paternal: Haplogroup J1+ FGC4745/FGC4766+ PF5019+, Gerardo Caprio, b. 1879, Caposele, Avellino, Campania, Italy
    Father's Maternal: Haplogroup T2b-C150T, Francisca Santa Cruz, b.1916, Garganchon, Burgos, Spain

    Avatar: Raetian bronze votive, Fritzens-Sanzeno Culture VI-V c. BC, Trentino-Alto Adige/Südtirol, Italy

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  11. #26
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    Try this

    Z040596 Boncuklu002 (Boncuklu002)
    Z145547 Tepecik002 (Tepecik002)

    This is my first upload of adna to gedmatch, maybe I messed something, check them for consistency.

    @all

    What is best/optimal file format for gedmatch upload? I mean for ancient DNAs.
    Last edited by Arame; 10-01-2016 at 07:32 AM.

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  13. #27
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    Interesting very east-med results for "Tepecik002" with eurogenes k15

    # Population Percent
    1 East_Med 37.16
    2 West_Med 30.49
    3 Atlantic 12.46
    4 Red_Sea 9.66
    5 West_Asian 4.14
    6 Northeast_African 2.63
    7 North_Sea 1.71

    Using 1 population approximation:
    1 Algerian_Jewish @ 14.441052
    2 Italian_Jewish @ 16.795654
    3 Tunisian_Jewish @ 17.887854
    4 Sephardic_Jewish @ 18.006317
    5 Libyan_Jewish @ 18.205700
    6 Tunisian @ 20.078026
    7 South_Italian @ 20.530573
    8 West_Sicilian @ 21.428238
    9 Algerian @ 21.598000
    10 East_Sicilian @ 22.253742
    11 Cyprian @ 22.419128
    12 Mozabite_Berber @ 22.784433
    13 Moroccan @ 22.948982
    14 Central_Greek @ 23.744345
    15 Ashkenazi @ 23.974663
    16 Samaritan @ 25.151434
    17 Italian_Abruzzo @ 25.564270
    18 Tuscan @ 26.564116
    19 Greek @ 26.862484
    20 Egyptian @ 26.891954

    Using 2 populations approximation:
    1 50% Sardinian +50% Yemenite_Jewish @ 7.335137
    Last edited by Ariel90; 10-01-2016 at 10:56 AM.

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  15. #28
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    Quote Originally Posted by Ariel90 View Post
    Interesting very east-med results for "Tepecik002" with eurogenes k15

    # Population Percent
    1 East_Med 37.16
    2 West_Med 30.49
    3 Atlantic 12.46
    4 Red_Sea 9.66
    5 West_Asian 4.14
    6 Northeast_African 2.63
    7 North_Sea 1.71

    Using 1 population approximation:
    1 Algerian_Jewish @ 14.441052
    2 Italian_Jewish @ 16.795654
    3 Tunisian_Jewish @ 17.887854
    4 Sephardic_Jewish @ 18.006317
    5 Libyan_Jewish @ 18.205700
    6 Tunisian @ 20.078026
    7 South_Italian @ 20.530573
    8 West_Sicilian @ 21.428238
    9 Algerian @ 21.598000
    10 East_Sicilian @ 22.253742
    11 Cyprian @ 22.419128
    12 Mozabite_Berber @ 22.784433
    13 Moroccan @ 22.948982
    14 Central_Greek @ 23.744345
    15 Ashkenazi @ 23.974663
    16 Samaritan @ 25.151434
    17 Italian_Abruzzo @ 25.564270
    18 Tuscan @ 26.564116
    19 Greek @ 26.862484
    20 Egyptian @ 26.891954

    Using 2 populations approximation:
    1 50% Sardinian +50% Yemenite_Jewish @ 7.335137
    Etruscan influence?

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  17. #29
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    "Etruscan influence? "

    This is a neoltihic sample, thousands of years before Etruscans.

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  19. #30
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    Tepecik is a South Anatolian sample. It can be called Middle Neolithic. Compared to Early Neolithic (Boncuklu) it has extra Natufian/LevantN (visible by the apparition of East Africa and increase in Red Sea ). Also it has some extra CHG ( visible by the apparition of West Asia). It is more Basal and has lower WHG.
    Tepecik samples are very heterogenous, so they can have various degree of extra Natufian and CHG.

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