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Thread: Eurogenes Northern_Europe PCA

  1. #501
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    Quote Originally Posted by anglesqueville View Post
    You should try bubbleplots ( with Past3 or anything else), I find them rather interesting for such analyses. Btw the PC4 seems to discriminate Komis rather specifically:
    Especially the second plot is nice.
    But I have done statistical cluster analysis with mclust. I am pretty sure that 8 clusters is the maximum you can squeeze from this dataset. So it is hard to believe that this bubble plot is not extremely overfitted. I have seen more graphs by Past3 which were badly overfitted.

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  3. #502
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    Quote Originally Posted by Agamemnon View Post
    My mother:
    0.0256 0.0097 0.0089 -0.0059 0.0012 0.0058 -0.0008 0.0013 0.0016 0.0028
    Here is your 8 cluster estimation
    Agamemnon:mom
    dist% = 0.6839
    B 67.8
    C 32.2

    Seems British indeed

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  5. #503
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    Quote Originally Posted by Huijbregts View Post
    Here is your 8 cluster estimation
    Agamemnon:mom
    dist% = 0.6839
    B 67.8
    C 32.2

    Seems British indeed
    Awesome, thanks!
    ᾽Άλλο δέ τοι ἐρέω, σὺ δ᾽ ἐνὶ φρεσὶ βάλλεο σῇσιν:
    κρύβδην, μηδ᾽ ἀναφανδά, φίλην ἐς πατρίδα γαῖαν
    νῆα κατισχέμεναι: ἐπεὶ οὐκέτι πιστὰ γυναιξίν.


    -Αγαμέμνων; H Οδύσσεια, Ραψωδία λ

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  7. #504
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    EDIT: don't use this; I will try again

    Maybe you wonder which reference samples are in which cluster
    ordered by sample label:
    Code:
                  Austrian:Austria1                Austrian:Austria2                Austrian:Austria3                Austrian:Austria4 
                                 "A"                              "D"                              "D"                              "A" 
                   Austrian:Austria5                Austrian:Austria6                Austrian:Austria7                Austrian:Austria8 
                                 "D"                              "D"                              "A"                              "A" 
                   Austrian:Austria9               Austrian:Austria10               Austrian:Austria11               Austrian:Austria12 
                                 "A"                              "D"                              "A"                              "A" 
                  Austrian:Austria13               Austrian:Austria14               Austrian:Austria15                Belarusian:bel23s 
                                 "D"                              "D"                              "A"                              "E" 
                   Belarusian:bel43s                Belarusian:bel82s               Belarusian:bel110c        Belarusian:belarusian47zp 
                                 "E"                              "E"                              "E"                              "E" 
                 Belarusian:belorus7                    Czech:CzechR1                    Czech:CzechR2                    Czech:CzechR3 
                                 "E"                              "D"                              "D"                              "D" 
                       Czech:CzechR4                    Czech:CzechR5                    Czech:CzechR6                    Czech:CzechR7 
                                 "D"                              "D"                              "D"                              "A" 
                       Czech:CzechR8                    Czech:CzechR9                   Czech:CzechR10                  Danish:Denmark1 
                                 "D"                              "D"                              "D"                              "C" 
                     Danish:Denmark2                  Danish:Denmark3                      Dutch:Neth1                      Dutch:Neth2 
                                 "C"                              "C"                              "C"                              "A" 
                         Dutch:Neth3                      Dutch:Neth4                      Dutch:Neth5                      Dutch:Neth6 
                                 "C"                              "C"                              "B"                              "A" 
                         Dutch:Neth7                      Dutch:Neth8                      Dutch:Neth9                     Dutch:Neth10 
                                 "C"                              "B"                              "A"                              "C" 
                        Dutch:Neth11                     Dutch:Neth12                     Dutch:Neth13                     Dutch:Neth14 
                                 "A"                              "A"                              "A"                              "A" 
                        Dutch:Neth15                   English:ENG003                   English:ENG004                 English:English1 
                                 "C"                              "A"                              "A"                              "B" 
                    English:English2                 English:English3                 English:English4                 English:English5 
                                 "B"                              "C"                              "A"                              "B" 
                    English:English6                     Estonian:ee1                    Estonian:ee14                    Estonian:ee45 
                                 "A"                              "F"                              "F"                              "F" 
                       Estonian:ee50                    Estonian:ee53                    Estonian:ee59                    Estonian:ee66 
                                 "F"                              "F"                              "F"                              "F" 
                       Estonian:ee68                    Estonian:ee72                    Estonian:ee78                    Estonian:ee86 
                                 "F"                              "F"                              "F"                              "F" 
                      Estonian:ee105                   Estonian:ee108                   Estonian:ee111                   Estonian:ee114 
                                 "F"                              "F"                              "F"                              "F" 
                      Estonian:ee136                   Estonian:ee140                   Estonian:ee144                   Estonian:ee147 
                                 "F"                              "F"                              "F"                              "F" 
                      Estonian:ee149                  Finnish:HG00176                  Finnish:HG00177                  Finnish:HG00178 
                                 "F"                              "H"                              "H"                              "H" 
                     Finnish:HG00179                  Finnish:HG00180                  Finnish:HG00185                  Finnish:HG00186 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00188                  Finnish:HG00189                  Finnish:HG00267                  Finnish:HG00268 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00269                  Finnish:HG00270                  Finnish:HG00273                  Finnish:HG00274 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00275                  Finnish:HG00276                  Finnish:HG00277                  Finnish:HG00280 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00281                  Finnish:HG00306                  Finnish:HG00311                  Finnish:HG00312 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00337                  Finnish:HG00344                  Finnish:HG00350                  Finnish:HG00355 
                                 "H"                              "H"                              "F"                              "H" 
                     Finnish:HG00376                   French:France1                   French:France2                   French:France3 
                                 "H"                              "A"                              "A"                              "A" 
                      French:France4                   French:France5                   French:France6                   French:France7 
                                 "A"                              "A"                              "A"                              "A" 
                      French:France8                   French:France9                  French:France10                  French:France11 
                                 "A"                              "A"                              "A"                              "A" 
                     French:France12                  French:France13                  French:France14                  French:France15 
                                 "A"                              "A"                              "A"                              "A" 
                     French:France16                  French:France17                  French:France18                  French:France19 
                                 "A"                              "D"                              "A"                              "A" 
                     French:France20                  French:France21                  French:France22                  French:France23 
                                 "A"                              "A"                              "A"                              "A" 
                     French:France24                  French:France25                German:IL550_0002                German:IL550_0031 
                                 "A"                              "A"                              "A"                              "D" 
                   German:IL550_0035                German:IL550_0055                German:IL550_0070                German:IL550_0091 
                                 "C"                              "D"                              "D"                              "D" 
                   German:IL550_0133                German:IL550_0147                German:IL550_0161                German:IL550_0185 
                                 "D"                              "D"                              "D"                              "C" 
                   German:IL550_0192                German:IL550_0204                German:IL550_0244                German:IL550_0264 
                                 "C"                              "D"                              "C"                              "D" 
                   German:IL550_0271                German:IL550_0278                German:IL550_0304                German:IL550_0306 
                                 "D"                              "C"                              "C"                              "D" 
                   German:IL550_0367                German:IL550_0391                German:IL550_0399                German:IL550_0413 
                                 "C"                              "D"                              "C"                              "C" 
                   German:IL550_0421                German:IL550_0433                German:IL550_0437                German:IL550_0445 
                                 "A"                              "C"                              "C"                              "C" 
                   German:IL550_0461                German:IL550_0552                German:IL550_0571                German:IL550_0620 
                                 "C"                              "D"                              "A"                              "C" 
                  Hungarian:hungary2               Hungarian:hungary4               Hungarian:hungary5               Hungarian:hungary6 
                                 "D"                              "D"                              "D"                              "D" 
                  Hungarian:hungary8               Hungarian:hungary9              Hungarian:hungary10              Hungarian:hungary11 
                                 "D"                              "D"                              "D"                              "A" 
                 Hungarian:hungary12              Hungarian:hungary13              Hungarian:hungary15              Hungarian:hungary16 
                                 "D"                              "D"                              "D"                              "D" 
                 Hungarian:hungary17              Hungarian:hungary18              Hungarian:hungary19                Icelandic:NA15755 
                                 "D"                              "D"                              "D"                              "C" 
                   Icelandic:NA15757                Icelandic:NA15759                Icelandic:NA15761                Icelandic:NA15763 
                                 "B"                              "B"                              "C"                              "C" 
                      Irish:Ireland1                   Irish:Ireland2                   Irish:Ireland3                   Irish:Ireland4 
                                 "B"                              "B"                              "B"                              "B" 
                      Irish:Ireland5                   Irish:Ireland6                   Irish:Ireland7                   Irish:Ireland8 
                                 "B"                              "B"                              "B"                              "A" 
                      Irish:Ireland9                  Irish:Ireland10                  Irish:Ireland11                  Irish:Ireland12 
                                 "B"                              "B"                              "B"                              "B" 
                     Irish:Ireland13                  Irish:Ireland14                  Irish:Ireland15                  Irish:Ireland16 
                                 "B"                              "B"                              "B"                              "B" 
                     Irish:Ireland17                  Irish:Ireland18                  Irish:Ireland19                  Irish:Ireland20 
                                 "B"                              "B"                              "B"                              "B" 
                     Irish:Ireland21                  Irish:Ireland22                  Irish:Ireland23                  Irish:Ireland24 
                                 "B"                              "A"                              "B"                              "B" 
                     Irish:Ireland25                     Irish:IRL001                     Irish:IRL002                     Irish:IRL003 
                                 "B"                              "B"                              "B"                              "B" 
                        Irish:IRL004                     Irish:IRL005                     Irish:IRL006                     Irish:IRL007 
                                 "B"                              "B"                              "B"                              "B" 
                   Karelian:karelia1                Karelian:karelia2                Karelian:karelia3                Karelian:karelia4 
                                 "H"                              "H"                              "H"                              "H" 
                   Karelian:karelia5                Karelian:karelia6                Karelian:karelia7                Karelian:karelia8 
                                 "H"                              "H"                              "H"                              "H" 
                   Karelian:karelia9               Karelian:karelia11               Karelian:karelia12               Karelian:karelia13 
                                 "H"                              "H"                              "H"                              "H" 
                  Karelian:karelia14               Karelian:karelia15                       Komi:komi1                       Komi:komi2 
                                 "H"                              "H"                              "G"                              "G" 
                          Komi:komi3                       Komi:komi4                       Komi:komi5                       Komi:komi6 
                                 "G"                              "G"                              "G"                              "G" 
                          Komi:komi7                       Komi:komi8                       Komi:komi9                      Komi:komi10 
                                 "G"                              "G"                              "G"                              "G" 
                         Komi:komi11                      Komi:komi12                      Komi:komi13                      Komi:komi14 
                                 "G"                              "G"                              "F"                              "G" 
                         Komi:komi15                      Komi:komi16              Latvian:latvian22J5              Latvian:latvian54A2 
                                 "G"                              "G"                              "F"                              "F" 
                 Latvian:latvian54F2              Latvian:latvian54H7              Latvian:latvian58C6              Latvian:latvian58C8 
                                 "E"                              "F"                              "F"                              "F" 
               Lithuanian:lithuania2            Lithuanian:lithuania4            Lithuanian:lithuania5            Lithuanian:lithuania6 
                                 "F"                              "F"                              "F"                              "E" 
               Lithuanian:lithuania7            Lithuanian:lithuania8                 Norwegian:NOR101                 Norwegian:NOR107 
                                 "F"                              "F"                              "C"                              "B" 
                    Norwegian:NOR109                 Norwegian:NOR119                 Norwegian:NOR126                 Norwegian:NOR342 
                                 "C"                              "C"                              "C"                              "C" 
                    Norwegian:NOR534               Orcadian:HGDP00796               Orcadian:HGDP00798               Orcadian:HGDP00800 
                                 "C"                              "C"                              "A"                              "B" 
                  Orcadian:HGDP00803               Orcadian:HGDP00806                   Polish:Polish1                   Polish:Polish2 
                                 "C"                              "C"                              "E"                              "E" 
                      Polish:Polish3                   Polish:Polish4                   Polish:Polish5                   Polish:Polish6 
                                 "E"                              "E"                              "E"                              "D" 
                      Polish:Polish7                   Polish:Polish8                   Polish:Polish9                  Polish:Polish10 
                                 "E"                              "E"                              "E"                              "E" 
                     Polish:Polish11                  Polish:Polish12                  Polish:Polish13                  Polish:Polish14 
                                 "E"                              "D"                              "E"                              "E" 
                     Polish:Polish15                  Polish:Polish16 Russian_Kostroma:Russia_Kostr120 Russian_Kostroma:Russia_Kostr128 
                                 "E"                              "E"                              "F"                              "F" 
    Russian_Kostroma:Russia_Kostr138 Russian_Kostroma:Russia_Kostr149 Russian_Kostroma:Russia_Kostr151 Russian_Kostroma:Russia_Kostr170 
                                 "F"                              "F"                              "F"                              "F" 
         Russian_Kursk:russianKursk6      Russian_Kursk:RussianKursk9     Russian_Kursk:RussianKursk15     Russian_Kursk:RussianKursk18 
                                 "E"                              "E"                              "E"                              "E" 
          Russian_Orel:russianOrjol1      Russian_Orel:RussianOrjol34      Russian_Orel:RussianOrjol45      Russian_Orel:russianOrjol56 
                                 "E"                              "E"                              "F"                              "E" 
         Russian_Orel:russianOrjol78      Russian_Orel:russianOrjol89     Russian_Orel:russianOrjol100  Russian_Smolensk:Russia_Smol303 
                                 "E"                              "E"                              "E"                              "E" 
     Russian_Smolensk:Russia_Smol304  Russian_Smolensk:Russia_Smol312  Russian_Smolensk:Russia_Smol339  Russian_Smolensk:Russia_Smol345 
                                 "E"                              "E"                              "F"                              "E" 
     Russian_Smolensk:Russia_Smol349  Russian_Smolensk:Russia_Smol350  Russian_Smolensk:SM256_Smolensk      Russian_Tver:Russia_Tver415 
                                 "E"                              "E"                              "E"                              "F" 
         Russian_Tver:Russia_Tver418      Russian_Tver:Russia_Tver442      Russian_Tver:Russia_Tver472  Russian_Voronez:russianVoron101 
                                 "F"                              "E"                              "E"                              "E" 
     Russian_Voronez:RussianVoron103  Russian_Voronez:RussianVoron105  Russian_Voronez:RussianVoron107               Scottish:Scotland1 
                                 "E"                              "E"                              "E"                              "B" 
                  Scottish:Scotland2               Scottish:Scotland4               Scottish:Scotland5               Scottish:Scottish1 
                                 "B"                              "A"                              "A"                              "B" 
                  Scottish:Scottish2               Scottish:Scottish4               Scottish:Scottish5               Scottish:Scottish6 
                                 "B"                              "B"                              "B"                              "B" 
                Slovakian:Slovakia77             Slovakian:Slovakia85             Slovakian:Slovakia94             Slovakian:Slovakia96 
                                 "D"                              "D"                              "D"                              "D" 
               Slovakian:Slovakia118            Slovakian:Slovakia150            Slovakian:Slovakia218            Slovakian:Slovakia222 
                                 "D"                              "D"                              "D"                              "D" 
               Slovakian:Slovakia233            Slovakian:Slovakia235            Slovakian:Slovakia256            Slovakian:Slovakia411 
                                 "D"                              "D"                              "D"                              "D" 
               Slovakian:Slovakia425            Slovakian:Slovakia429            Slovakian:Slovakia474            Slovenian:Slovenian90 
                                 "D"                              "D"                              "D"                              "D" 
              Slovenian:Slovenian136           Slovenian:Slovenian137           Slovenian:Slovenian147           Slovenian:Slovenian172 
                                 "D"                              "D"                              "D"                              "D" 
              Slovenian:Slovenian184           Slovenian:Slovenian188           Slovenian:Slovenian237           Slovenian:Slovenian241 
                                 "D"                              "D"                              "D"                              "D" 
              Slovenian:Slovenian271           Slovenian:Slovenian275           Slovenian:Slovenian299           Slovenian:Slovenian321 
                                 "D"                              "D"                              "D"                              "D" 
               Slovenian:Slovenian_8           Slovenian:Slovenian_14                  Swedish:Sweden1                  Swedish:Sweden2 
                                 "D"                              "D"                              "C"                              "C" 
                     Swedish:Sweden3                  Swedish:Sweden4                  Swedish:Sweden5                  Swedish:Sweden6 
                                 "C"                              "C"                              "C"                              "C" 
                     Swedish:Sweden7                  Swedish:Sweden8                  Swedish:Sweden9                 Swedish:Sweden10 
                                 "C"                              "C"                              "C"                              "C" 
                    Swedish:Sweden11                 Swedish:Sweden12                 Swedish:Sweden13                 Swedish:Sweden15 
                                 "D"                              "C"                              "C"                              "C" 
                    Swedish:Sweden16                 Swedish:Sweden17                 Swedish:Sweden18                 Swedish:Sweden20 
                                 "C"                              "C"                              "C"                              "C" 
             Ukrainian_Lviv:UkrLv215          Ukrainian_Lviv:UkrLv223          Ukrainian_Lviv:UkrLv226          Ukrainian_Lviv:UkrLv240 
                                 "E"                              "E"                              "D"                              "D" 
         Ukrainian_Poltava:Ukraine94     Ukrainian_Poltava:Ukraine136     Ukrainian_Poltava:Ukraine141   Ukrainian_Poltava:UkrainePol19 
                                 "E"                              "E"                              "E"                              "E" 
      Ukrainian_Poltava:UkrainePol25                   Vepsian:vepsa1                  Vepsian:vepsa10                  Vepsian:vepsa19 
                                 "D"                              "H"                              "H"                              "F" 
                     Vepsian:vepsa34                  Vepsian:vepsa46                  Vepsian:vepsa55                  Vepsian:vepsa59 
                                 "H"                              "H"                              "H"                              "H" 
                     Vepsian:vepsa61                  Vepsian:vepsa64 
                                 "H"                              "H"
    Ordered by cluster in next post
    Last edited by Huijbregts; Yesterday at 07:22 AM.

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  9. #505
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    EDIT: don't use this, I will try again

    Reference samples by cluster:
    Code:
                  Austrian:Austria1                Austrian:Austria4                Austrian:Austria7                Austrian:Austria8 
                                 "A"                              "A"                              "A"                              "A" 
                   Austrian:Austria9               Austrian:Austria11               Austrian:Austria12               Austrian:Austria15 
                                 "A"                              "A"                              "A"                              "A" 
                       Czech:CzechR7                      Dutch:Neth2                      Dutch:Neth6                      Dutch:Neth9 
                                 "A"                              "A"                              "A"                              "A" 
                        Dutch:Neth11                     Dutch:Neth12                     Dutch:Neth13                     Dutch:Neth14 
                                 "A"                              "A"                              "A"                              "A" 
                      English:ENG003                   English:ENG004                 English:English4                 English:English6 
                                 "A"                              "A"                              "A"                              "A" 
                      French:France1                   French:France2                   French:France3                   French:France4 
                                 "A"                              "A"                              "A"                              "A" 
                      French:France5                   French:France6                   French:France7                   French:France8 
                                 "A"                              "A"                              "A"                              "A" 
                      French:France9                  French:France10                  French:France11                  French:France12 
                                 "A"                              "A"                              "A"                              "A" 
                     French:France13                  French:France14                  French:France15                  French:France16 
                                 "A"                              "A"                              "A"                              "A" 
                     French:France18                  French:France19                  French:France20                  French:France21 
                                 "A"                              "A"                              "A"                              "A" 
                     French:France22                  French:France23                  French:France24                  French:France25 
                                 "A"                              "A"                              "A"                              "A" 
                   German:IL550_0002                German:IL550_0421                German:IL550_0571              Hungarian:hungary11 
                                 "A"                              "A"                              "A"                              "A" 
                      Irish:Ireland8                  Irish:Ireland22               Orcadian:HGDP00798               Scottish:Scotland4 
                                 "A"                              "A"                              "A"                              "A" 
                  Scottish:Scotland5                      Dutch:Neth5                      Dutch:Neth8                 English:English1 
                                 "A"                              "B"                              "B"                              "B" 
                    English:English2                 English:English5                Icelandic:NA15757                Icelandic:NA15759 
                                 "B"                              "B"                              "B"                              "B" 
                      Irish:Ireland1                   Irish:Ireland2                   Irish:Ireland3                   Irish:Ireland4 
                                 "B"                              "B"                              "B"                              "B" 
                      Irish:Ireland5                   Irish:Ireland6                   Irish:Ireland7                   Irish:Ireland9 
                                 "B"                              "B"                              "B"                              "B" 
                     Irish:Ireland10                  Irish:Ireland11                  Irish:Ireland12                  Irish:Ireland13 
                                 "B"                              "B"                              "B"                              "B" 
                     Irish:Ireland14                  Irish:Ireland15                  Irish:Ireland16                  Irish:Ireland17 
                                 "B"                              "B"                              "B"                              "B" 
                     Irish:Ireland18                  Irish:Ireland19                  Irish:Ireland20                  Irish:Ireland21 
                                 "B"                              "B"                              "B"                              "B" 
                     Irish:Ireland23                  Irish:Ireland24                  Irish:Ireland25                     Irish:IRL001 
                                 "B"                              "B"                              "B"                              "B" 
                        Irish:IRL002                     Irish:IRL003                     Irish:IRL004                     Irish:IRL005 
                                 "B"                              "B"                              "B"                              "B" 
                        Irish:IRL006                     Irish:IRL007                 Norwegian:NOR107               Orcadian:HGDP00800 
                                 "B"                              "B"                              "B"                              "B" 
                  Scottish:Scotland1               Scottish:Scotland2               Scottish:Scottish1               Scottish:Scottish2 
                                 "B"                              "B"                              "B"                              "B" 
                  Scottish:Scottish4               Scottish:Scottish5               Scottish:Scottish6                  Danish:Denmark1 
                                 "B"                              "B"                              "B"                              "C" 
                     Danish:Denmark2                  Danish:Denmark3                      Dutch:Neth1                      Dutch:Neth3 
                                 "C"                              "C"                              "C"                              "C" 
                         Dutch:Neth4                      Dutch:Neth7                     Dutch:Neth10                     Dutch:Neth15 
                                 "C"                              "C"                              "C"                              "C" 
                    English:English3                German:IL550_0035                German:IL550_0185                German:IL550_0192 
                                 "C"                              "C"                              "C"                              "C" 
                   German:IL550_0244                German:IL550_0278                German:IL550_0304                German:IL550_0367 
                                 "C"                              "C"                              "C"                              "C" 
                   German:IL550_0399                German:IL550_0413                German:IL550_0433                German:IL550_0437 
                                 "C"                              "C"                              "C"                              "C" 
                   German:IL550_0445                German:IL550_0461                German:IL550_0620                Icelandic:NA15755 
                                 "C"                              "C"                              "C"                              "C" 
                   Icelandic:NA15761                Icelandic:NA15763                 Norwegian:NOR101                 Norwegian:NOR109 
                                 "C"                              "C"                              "C"                              "C" 
                    Norwegian:NOR119                 Norwegian:NOR126                 Norwegian:NOR342                 Norwegian:NOR534 
                                 "C"                              "C"                              "C"                              "C" 
                  Orcadian:HGDP00796               Orcadian:HGDP00803               Orcadian:HGDP00806                  Swedish:Sweden1 
                                 "C"                              "C"                              "C"                              "C" 
                     Swedish:Sweden2                  Swedish:Sweden3                  Swedish:Sweden4                  Swedish:Sweden5 
                                 "C"                              "C"                              "C"                              "C" 
                     Swedish:Sweden6                  Swedish:Sweden7                  Swedish:Sweden8                  Swedish:Sweden9 
                                 "C"                              "C"                              "C"                              "C" 
                    Swedish:Sweden10                 Swedish:Sweden12                 Swedish:Sweden13                 Swedish:Sweden15 
                                 "C"                              "C"                              "C"                              "C" 
                    Swedish:Sweden16                 Swedish:Sweden17                 Swedish:Sweden18                 Swedish:Sweden20 
                                 "C"                              "C"                              "C"                              "C" 
                   Austrian:Austria2                Austrian:Austria3                Austrian:Austria5                Austrian:Austria6 
                                 "D"                              "D"                              "D"                              "D" 
                  Austrian:Austria10               Austrian:Austria13               Austrian:Austria14                    Czech:CzechR1 
                                 "D"                              "D"                              "D"                              "D" 
                       Czech:CzechR2                    Czech:CzechR3                    Czech:CzechR4                    Czech:CzechR5 
                                 "D"                              "D"                              "D"                              "D" 
                       Czech:CzechR6                    Czech:CzechR8                    Czech:CzechR9                   Czech:CzechR10 
                                 "D"                              "D"                              "D"                              "D" 
                     French:France17                German:IL550_0031                German:IL550_0055                German:IL550_0070 
                                 "D"                              "D"                              "D"                              "D" 
                   German:IL550_0091                German:IL550_0133                German:IL550_0147                German:IL550_0161 
                                 "D"                              "D"                              "D"                              "D" 
                   German:IL550_0204                German:IL550_0264                German:IL550_0271                German:IL550_0306 
                                 "D"                              "D"                              "D"                              "D" 
                   German:IL550_0391                German:IL550_0552               Hungarian:hungary2               Hungarian:hungary4 
                                 "D"                              "D"                              "D"                              "D" 
                  Hungarian:hungary5               Hungarian:hungary6               Hungarian:hungary8               Hungarian:hungary9 
                                 "D"                              "D"                              "D"                              "D" 
                 Hungarian:hungary10              Hungarian:hungary12              Hungarian:hungary13              Hungarian:hungary15 
                                 "D"                              "D"                              "D"                              "D" 
                 Hungarian:hungary16              Hungarian:hungary17              Hungarian:hungary18              Hungarian:hungary19 
                                 "D"                              "D"                              "D"                              "D" 
                      Polish:Polish6                  Polish:Polish12             Slovakian:Slovakia77             Slovakian:Slovakia85 
                                 "D"                              "D"                              "D"                              "D" 
                Slovakian:Slovakia94             Slovakian:Slovakia96            Slovakian:Slovakia118            Slovakian:Slovakia150 
                                 "D"                              "D"                              "D"                              "D" 
               Slovakian:Slovakia218            Slovakian:Slovakia222            Slovakian:Slovakia233            Slovakian:Slovakia235 
                                 "D"                              "D"                              "D"                              "D" 
               Slovakian:Slovakia256            Slovakian:Slovakia411            Slovakian:Slovakia425            Slovakian:Slovakia429 
                                 "D"                              "D"                              "D"                              "D" 
               Slovakian:Slovakia474            Slovenian:Slovenian90           Slovenian:Slovenian136           Slovenian:Slovenian137 
                                 "D"                              "D"                              "D"                              "D" 
              Slovenian:Slovenian147           Slovenian:Slovenian172           Slovenian:Slovenian184           Slovenian:Slovenian188 
                                 "D"                              "D"                              "D"                              "D" 
              Slovenian:Slovenian237           Slovenian:Slovenian241           Slovenian:Slovenian271           Slovenian:Slovenian275 
                                 "D"                              "D"                              "D"                              "D" 
              Slovenian:Slovenian299           Slovenian:Slovenian321            Slovenian:Slovenian_8           Slovenian:Slovenian_14 
                                 "D"                              "D"                              "D"                              "D" 
                    Swedish:Sweden11          Ukrainian_Lviv:UkrLv226          Ukrainian_Lviv:UkrLv240   Ukrainian_Poltava:UkrainePol25 
                                 "D"                              "D"                              "D"                              "D" 
                   Belarusian:bel23s                Belarusian:bel43s                Belarusian:bel82s               Belarusian:bel110c 
                                 "E"                              "E"                              "E"                              "E" 
           Belarusian:belarusian47zp              Belarusian:belorus7              Latvian:latvian54F2            Lithuanian:lithuania6 
                                 "E"                              "E"                              "E"                              "E" 
                      Polish:Polish1                   Polish:Polish2                   Polish:Polish3                   Polish:Polish4 
                                 "E"                              "E"                              "E"                              "E" 
                      Polish:Polish5                   Polish:Polish7                   Polish:Polish8                   Polish:Polish9 
                                 "E"                              "E"                              "E"                              "E" 
                     Polish:Polish10                  Polish:Polish11                  Polish:Polish13                  Polish:Polish14 
                                 "E"                              "E"                              "E"                              "E" 
                     Polish:Polish15                  Polish:Polish16      Russian_Kursk:russianKursk6      Russian_Kursk:RussianKursk9 
                                 "E"                              "E"                              "E"                              "E" 
        Russian_Kursk:RussianKursk15     Russian_Kursk:RussianKursk18       Russian_Orel:russianOrjol1      Russian_Orel:RussianOrjol34 
                                 "E"                              "E"                              "E"                              "E" 
         Russian_Orel:russianOrjol56      Russian_Orel:russianOrjol78      Russian_Orel:russianOrjol89     Russian_Orel:russianOrjol100 
                                 "E"                              "E"                              "E"                              "E" 
     Russian_Smolensk:Russia_Smol303  Russian_Smolensk:Russia_Smol304  Russian_Smolensk:Russia_Smol312  Russian_Smolensk:Russia_Smol345 
                                 "E"                              "E"                              "E"                              "E" 
     Russian_Smolensk:Russia_Smol349  Russian_Smolensk:Russia_Smol350  Russian_Smolensk:SM256_Smolensk      Russian_Tver:Russia_Tver442 
                                 "E"                              "E"                              "E"                              "E" 
         Russian_Tver:Russia_Tver472  Russian_Voronez:russianVoron101  Russian_Voronez:RussianVoron103  Russian_Voronez:RussianVoron105 
                                 "E"                              "E"                              "E"                              "E" 
     Russian_Voronez:RussianVoron107          Ukrainian_Lviv:UkrLv215          Ukrainian_Lviv:UkrLv223      Ukrainian_Poltava:Ukraine94 
                                 "E"                              "E"                              "E"                              "E" 
        Ukrainian_Poltava:Ukraine136     Ukrainian_Poltava:Ukraine141   Ukrainian_Poltava:UkrainePol19                     Estonian:ee1 
                                 "E"                              "E"                              "E"                              "F" 
                       Estonian:ee14                    Estonian:ee45                    Estonian:ee50                    Estonian:ee53 
                                 "F"                              "F"                              "F"                              "F" 
                       Estonian:ee59                    Estonian:ee66                    Estonian:ee68                    Estonian:ee72 
                                 "F"                              "F"                              "F"                              "F" 
                       Estonian:ee78                    Estonian:ee86                   Estonian:ee105                   Estonian:ee108 
                                 "F"                              "F"                              "F"                              "F" 
                      Estonian:ee111                   Estonian:ee114                   Estonian:ee136                   Estonian:ee140 
                                 "F"                              "F"                              "F"                              "F" 
                      Estonian:ee144                   Estonian:ee147                   Estonian:ee149                  Finnish:HG00350 
                                 "F"                              "F"                              "F"                              "F" 
                         Komi:komi13              Latvian:latvian22J5              Latvian:latvian54A2              Latvian:latvian54H7 
                                 "F"                              "F"                              "F"                              "F" 
                 Latvian:latvian58C6              Latvian:latvian58C8            Lithuanian:lithuania2            Lithuanian:lithuania4 
                                 "F"                              "F"                              "F"                              "F" 
               Lithuanian:lithuania5            Lithuanian:lithuania7            Lithuanian:lithuania8 Russian_Kostroma:Russia_Kostr120 
                                 "F"                              "F"                              "F"                              "F" 
    Russian_Kostroma:Russia_Kostr128 Russian_Kostroma:Russia_Kostr138 Russian_Kostroma:Russia_Kostr149 Russian_Kostroma:Russia_Kostr151 
                                 "F"                              "F"                              "F"                              "F" 
    Russian_Kostroma:Russia_Kostr170      Russian_Orel:RussianOrjol45  Russian_Smolensk:Russia_Smol339      Russian_Tver:Russia_Tver415 
                                 "F"                              "F"                              "F"                              "F" 
         Russian_Tver:Russia_Tver418                  Vepsian:vepsa19                       Komi:komi1                       Komi:komi2 
                                 "F"                              "F"                              "G"                              "G" 
                          Komi:komi3                       Komi:komi4                       Komi:komi5                       Komi:komi6 
                                 "G"                              "G"                              "G"                              "G" 
                          Komi:komi7                       Komi:komi8                       Komi:komi9                      Komi:komi10 
                                 "G"                              "G"                              "G"                              "G" 
                         Komi:komi11                      Komi:komi12                      Komi:komi14                      Komi:komi15 
                                 "G"                              "G"                              "G"                              "G" 
                         Komi:komi16                  Finnish:HG00176                  Finnish:HG00177                  Finnish:HG00178 
                                 "G"                              "H"                              "H"                              "H" 
                     Finnish:HG00179                  Finnish:HG00180                  Finnish:HG00185                  Finnish:HG00186 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00188                  Finnish:HG00189                  Finnish:HG00267                  Finnish:HG00268 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00269                  Finnish:HG00270                  Finnish:HG00273                  Finnish:HG00274 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00275                  Finnish:HG00276                  Finnish:HG00277                  Finnish:HG00280 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00281                  Finnish:HG00306                  Finnish:HG00311                  Finnish:HG00312 
                                 "H"                              "H"                              "H"                              "H" 
                     Finnish:HG00337                  Finnish:HG00344                  Finnish:HG00355                  Finnish:HG00376 
                                 "H"                              "H"                              "H"                              "H" 
                   Karelian:karelia1                Karelian:karelia2                Karelian:karelia3                Karelian:karelia4 
                                 "H"                              "H"                              "H"                              "H" 
                   Karelian:karelia5                Karelian:karelia6                Karelian:karelia7                Karelian:karelia8 
                                 "H"                              "H"                              "H"                              "H" 
                   Karelian:karelia9               Karelian:karelia11               Karelian:karelia12               Karelian:karelia13 
                                 "H"                              "H"                              "H"                              "H" 
                  Karelian:karelia14               Karelian:karelia15                   Vepsian:vepsa1                  Vepsian:vepsa10 
                                 "H"                              "H"                              "H"                              "H" 
                     Vepsian:vepsa34                  Vepsian:vepsa46                  Vepsian:vepsa55                  Vepsian:vepsa59 
                                 "H"                              "H"                              "H"                              "H" 
                     Vepsian:vepsa61                  Vepsian:vepsa64 
                                 "H"                              "H"
    Last edited by Huijbregts; Yesterday at 07:23 AM.

  10. The Following 2 Users Say Thank You to Huijbregts For This Useful Post:

     Agamemnon (11-23-2017), randwulf (11-23-2017)

  11. #506
    Registered Users
    Posts
    321
    Sex
    Location
    Netherlands
    Ethnicity
    South-Dutch
    Nationality
    Dutch
    Y-DNA
    I2a2a1b2-CTS1977
    mtDNA
    H13a1a1

    Netherlands Belgium
    I will try again:
    samples ordered by sample label:
    Code:
    Austrian:Austria1,A
    Austrian:Austria2,D
    Austrian:Austria3,D
    Austrian:Austria4,A
    Austrian:Austria5,D
    Austrian:Austria6,D
    Austrian:Austria7,A
    Austrian:Austria8,A
    Austrian:Austria9,A
    Austrian:Austria10,D
    Austrian:Austria11,A
    Austrian:Austria12,A
    Austrian:Austria13,D
    Austrian:Austria14,D
    Austrian:Austria15,A
    Belarusian:bel23s,E
    Belarusian:bel43s,E
    Belarusian:bel82s,E
    Belarusian:bel110c,E
    Belarusian:belarusian47zp,E
    Belarusian:belorus7,E
    Czech:CzechR1,D
    Czech:CzechR2,D
    Czech:CzechR3,D
    Czech:CzechR4,D
    Czech:CzechR5,D
    Czech:CzechR6,D
    Czech:CzechR7,A
    Czech:CzechR8,D
    Czech:CzechR9,D
    Czech:CzechR10,D
    Danish:Denmark1,C
    Danish:Denmark2,C
    Danish:Denmark3,C
    Dutch:Neth1,C
    Dutch:Neth2,A
    Dutch:Neth3,C
    Dutch:Neth4,C
    Dutch:Neth5,B
    Dutch:Neth6,A
    Dutch:Neth7,C
    Dutch:Neth8,B
    Dutch:Neth9,A
    Dutch:Neth10,C
    Dutch:Neth11,A
    Dutch:Neth12,A
    Dutch:Neth13,A
    Dutch:Neth14,A
    Dutch:Neth15,C
    English:ENG003,A
    English:ENG004,A
    English:English1,B
    English:English2,B
    English:English3,C
    English:English4,A
    English:English5,B
    English:English6,A
    Estonian:ee1,F
    Estonian:ee14,F
    Estonian:ee45,F
    Estonian:ee50,F
    Estonian:ee53,F
    Estonian:ee59,F
    Estonian:ee66,F
    Estonian:ee68,F
    Estonian:ee72,F
    Estonian:ee78,F
    Estonian:ee86,F
    Estonian:ee105,F
    Estonian:ee108,F
    Estonian:ee111,F
    Estonian:ee114,F
    Estonian:ee136,F
    Estonian:ee140,F
    Estonian:ee144,F
    Estonian:ee147,F
    Estonian:ee149,F
    Finnish:HG00176,H
    Finnish:HG00177,H
    Finnish:HG00178,H
    Finnish:HG00179,H
    Finnish:HG00180,H
    Finnish:HG00185,H
    Finnish:HG00186,H
    Finnish:HG00188,H
    Finnish:HG00189,H
    Finnish:HG00267,H
    Finnish:HG00268,H
    Finnish:HG00269,H
    Finnish:HG00270,H
    Finnish:HG00273,H
    Finnish:HG00274,H
    Finnish:HG00275,H
    Finnish:HG00276,H
    Finnish:HG00277,H
    Finnish:HG00280,H
    Finnish:HG00281,H
    Finnish:HG00306,H
    Finnish:HG00311,H
    Finnish:HG00312,H
    Finnish:HG00337,H
    Finnish:HG00344,H
    Finnish:HG00350,F
    Finnish:HG00355,H
    Finnish:HG00376,H
    French:France1,A
    French:France2,A
    French:France3,A
    French:France4,A
    French:France5,A
    French:France6,A
    French:France7,A
    French:France8,A
    French:France9,A
    French:France10,A
    French:France11,A
    French:France12,A
    French:France13,A
    French:France14,A
    French:France15,A
    French:France16,A
    French:France17,D
    French:France18,A
    French:France19,A
    French:France20,A
    French:France21,A
    French:France22,A
    French:France23,A
    French:France24,A
    French:France25,A
    German:IL550_0002,A
    German:IL550_0031,D
    German:IL550_0035,C
    German:IL550_0055,D
    German:IL550_0070,D
    German:IL550_0091,D
    German:IL550_0133,D
    German:IL550_0147,D
    German:IL550_0161,D
    German:IL550_0185,C
    German:IL550_0192,C
    German:IL550_0204,D
    German:IL550_0244,C
    German:IL550_0264,D
    German:IL550_0271,D
    German:IL550_0278,C
    German:IL550_0304,C
    German:IL550_0306,D
    German:IL550_0367,C
    German:IL550_0391,D
    German:IL550_0399,C
    German:IL550_0413,C
    German:IL550_0421,A
    German:IL550_0433,C
    German:IL550_0437,C
    German:IL550_0445,C
    German:IL550_0461,C
    German:IL550_0552,D
    German:IL550_0571,A
    German:IL550_0620,C
    Hungarian:hungary2,D
    Hungarian:hungary4,D
    Hungarian:hungary5,D
    Hungarian:hungary6,D
    Hungarian:hungary8,D
    Hungarian:hungary9,D
    Hungarian:hungary10,D
    Hungarian:hungary11,A
    Hungarian:hungary12,D
    Hungarian:hungary13,D
    Hungarian:hungary15,D
    Hungarian:hungary16,D
    Hungarian:hungary17,D
    Hungarian:hungary18,D
    Hungarian:hungary19,D
    Icelandic:NA15755,C
    Icelandic:NA15757,B
    Icelandic:NA15759,B
    Icelandic:NA15761,C
    Icelandic:NA15763,C
    Irish:Ireland1,B
    Irish:Ireland2,B
    Irish:Ireland3,B
    Irish:Ireland4,B
    Irish:Ireland5,B
    Irish:Ireland6,B
    Irish:Ireland7,B
    Irish:Ireland8,A
    Irish:Ireland9,B
    Irish:Ireland10,B
    Irish:Ireland11,B
    Irish:Ireland12,B
    Irish:Ireland13,B
    Irish:Ireland14,B
    Irish:Ireland15,B
    Irish:Ireland16,B
    Irish:Ireland17,B
    Irish:Ireland18,B
    Irish:Ireland19,B
    Irish:Ireland20,B
    Irish:Ireland21,B
    Irish:Ireland22,A
    Irish:Ireland23,B
    Irish:Ireland24,B
    Irish:Ireland25,B
    Irish:IRL001,B
    Irish:IRL002,B
    Irish:IRL003,B
    Irish:IRL004,B
    Irish:IRL005,B
    Irish:IRL006,B
    Irish:IRL007,B
    Karelian:karelia1,H
    Karelian:karelia2,H
    Karelian:karelia3,H
    Karelian:karelia4,H
    Karelian:karelia5,H
    Karelian:karelia6,H
    Karelian:karelia7,H
    Karelian:karelia8,H
    Karelian:karelia9,H
    Karelian:karelia11,H
    Karelian:karelia12,H
    Karelian:karelia13,H
    Karelian:karelia14,H
    Karelian:karelia15,H
    Komi:komi1,G
    Komi:komi2,G
    Komi:komi3,G
    Komi:komi4,G
    Komi:komi5,G
    Komi:komi6,G
    Komi:komi7,G
    Komi:komi8,G
    Komi:komi9,G
    Komi:komi10,G
    Komi:komi11,G
    Komi:komi12,G
    Komi:komi13,F
    Komi:komi14,G
    Komi:komi15,G
    Komi:komi16,G
    Latvian:latvian22J5,F
    Latvian:latvian54A2,F
    Latvian:latvian54F2,E
    Latvian:latvian54H7,F
    Latvian:latvian58C6,F
    Latvian:latvian58C8,F
    Lithuanian:lithuania2,F
    Lithuanian:lithuania4,F
    Lithuanian:lithuania5,F
    Lithuanian:lithuania6,E
    Lithuanian:lithuania7,F
    Lithuanian:lithuania8,F
    Norwegian:NOR101,C
    Norwegian:NOR107,B
    Norwegian:NOR109,C
    Norwegian:NOR119,C
    Norwegian:NOR126,C
    Norwegian:NOR342,C
    Norwegian:NOR534,C
    Orcadian:HGDP00796,C
    Orcadian:HGDP00798,A
    Orcadian:HGDP00800,B
    Orcadian:HGDP00803,C
    Orcadian:HGDP00806,C
    Polish:Polish1,E
    Polish:Polish2,E
    Polish:Polish3,E
    Polish:Polish4,E
    Polish:Polish5,E
    Polish:Polish6,D
    Polish:Polish7,E
    Polish:Polish8,E
    Polish:Polish9,E
    Polish:Polish10,E
    Polish:Polish11,E
    Polish:Polish12,D
    Polish:Polish13,E
    Polish:Polish14,E
    Polish:Polish15,E
    Polish:Polish16,E
    Russian_Kostroma:Russia_Kostr120,F
    Russian_Kostroma:Russia_Kostr128,F
    Russian_Kostroma:Russia_Kostr138,F
    Russian_Kostroma:Russia_Kostr149,F
    Russian_Kostroma:Russia_Kostr151,F
    Russian_Kostroma:Russia_Kostr170,F
    Russian_Kursk:russianKursk6,E
    Russian_Kursk:RussianKursk9,E
    Russian_Kursk:RussianKursk15,E
    Russian_Kursk:RussianKursk18,E
    Russian_Orel:russianOrjol1,E
    Russian_Orel:RussianOrjol34,E
    Russian_Orel:RussianOrjol45,F
    Russian_Orel:russianOrjol56,E
    Russian_Orel:russianOrjol78,E
    Russian_Orel:russianOrjol89,E
    Russian_Orel:russianOrjol100,E
    Russian_Smolensk:Russia_Smol303,E
    Russian_Smolensk:Russia_Smol304,E
    Russian_Smolensk:Russia_Smol312,E
    Russian_Smolensk:Russia_Smol339,F
    Russian_Smolensk:Russia_Smol345,E
    Russian_Smolensk:Russia_Smol349,E
    Russian_Smolensk:Russia_Smol350,E
    Russian_Smolensk:SM256_Smolensk,E
    Russian_Tver:Russia_Tver415,F
    Russian_Tver:Russia_Tver418,F
    Russian_Tver:Russia_Tver442,E
    Russian_Tver:Russia_Tver472,E
    Russian_Voronez:russianVoron101,E
    Russian_Voronez:RussianVoron103,E
    Russian_Voronez:RussianVoron105,E
    Russian_Voronez:RussianVoron107,E
    Scottish:Scotland1,B
    Scottish:Scotland2,B
    Scottish:Scotland4,A
    Scottish:Scotland5,A
    Scottish:Scottish1,B
    Scottish:Scottish2,B
    Scottish:Scottish4,B
    Scottish:Scottish5,B
    Scottish:Scottish6,B
    Slovakian:Slovakia77,D
    Slovakian:Slovakia85,D
    Slovakian:Slovakia94,D
    Slovakian:Slovakia96,D
    Slovakian:Slovakia118,D
    Slovakian:Slovakia150,D
    Slovakian:Slovakia218,D
    Slovakian:Slovakia222,D
    Slovakian:Slovakia233,D
    Slovakian:Slovakia235,D
    Slovakian:Slovakia256,D
    Slovakian:Slovakia411,D
    Slovakian:Slovakia425,D
    Slovakian:Slovakia429,D
    Slovakian:Slovakia474,D
    Slovenian:Slovenian90,D
    Slovenian:Slovenian136,D
    Slovenian:Slovenian137,D
    Slovenian:Slovenian147,D
    Slovenian:Slovenian172,D
    Slovenian:Slovenian184,D
    Slovenian:Slovenian188,D
    Slovenian:Slovenian237,D
    Slovenian:Slovenian241,D
    Slovenian:Slovenian271,D
    Slovenian:Slovenian275,D
    Slovenian:Slovenian299,D
    Slovenian:Slovenian321,D
    Slovenian:Slovenian_8,D
    Slovenian:Slovenian_14,D
    Swedish:Sweden1,C
    Swedish:Sweden2,C
    Swedish:Sweden3,C
    Swedish:Sweden4,C
    Swedish:Sweden5,C
    Swedish:Sweden6,C
    Swedish:Sweden7,C
    Swedish:Sweden8,C
    Swedish:Sweden9,C
    Swedish:Sweden10,C
    Swedish:Sweden11,D
    Swedish:Sweden12,C
    Swedish:Sweden13,C
    Swedish:Sweden15,C
    Swedish:Sweden16,C
    Swedish:Sweden17,C
    Swedish:Sweden18,C
    Swedish:Sweden20,C
    Ukrainian_Lviv:UkrLv215,E
    Ukrainian_Lviv:UkrLv223,E
    Ukrainian_Lviv:UkrLv226,D
    Ukrainian_Lviv:UkrLv240,D
    Ukrainian_Poltava:Ukraine94,E
    Ukrainian_Poltava:Ukraine136,E
    Ukrainian_Poltava:Ukraine141,E
    Ukrainian_Poltava:UkrainePol19,E
    Ukrainian_Poltava:UkrainePol25,D
    Vepsian:vepsa1,H
    Vepsian:vepsa10,H
    Vepsian:vepsa19,F
    Vepsian:vepsa34,H
    Vepsian:vepsa46,H
    Vepsian:vepsa55,H
    Vepsian:vepsa59,H
    Vepsian:vepsa61,H
    Vepsian:vepsa64,H

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  13. #507
    Registered Users
    Posts
    321
    Sex
    Location
    Netherlands
    Ethnicity
    South-Dutch
    Nationality
    Dutch
    Y-DNA
    I2a2a1b2-CTS1977
    mtDNA
    H13a1a1

    Netherlands Belgium
    samples ordered by cluster
    Code:
    Austrian:Austria1,A
    Austrian:Austria4,A
    Austrian:Austria7,A
    Austrian:Austria8,A
    Austrian:Austria9,A
    Austrian:Austria11,A
    Austrian:Austria12,A
    Austrian:Austria15,A
    Czech:CzechR7,A
    Dutch:Neth2,A
    Dutch:Neth6,A
    Dutch:Neth9,A
    Dutch:Neth11,A
    Dutch:Neth12,A
    Dutch:Neth13,A
    Dutch:Neth14,A
    English:ENG003,A
    English:ENG004,A
    English:English4,A
    English:English6,A
    French:France1,A
    French:France2,A
    French:France3,A
    French:France4,A
    French:France5,A
    French:France6,A
    French:France7,A
    French:France8,A
    French:France9,A
    French:France10,A
    French:France11,A
    French:France12,A
    French:France13,A
    French:France14,A
    French:France15,A
    French:France16,A
    French:France18,A
    French:France19,A
    French:France20,A
    French:France21,A
    French:France22,A
    French:France23,A
    French:France24,A
    French:France25,A
    German:IL550_0002,A
    German:IL550_0421,A
    German:IL550_0571,A
    Hungarian:hungary11,A
    Irish:Ireland8,A
    Irish:Ireland22,A
    Orcadian:HGDP00798,A
    Scottish:Scotland4,A
    Scottish:Scotland5,A
    Dutch:Neth5,B
    Dutch:Neth8,B
    English:English1,B
    English:English2,B
    English:English5,B
    Icelandic:NA15757,B
    Icelandic:NA15759,B
    Irish:Ireland1,B
    Irish:Ireland2,B
    Irish:Ireland3,B
    Irish:Ireland4,B
    Irish:Ireland5,B
    Irish:Ireland6,B
    Irish:Ireland7,B
    Irish:Ireland9,B
    Irish:Ireland10,B
    Irish:Ireland11,B
    Irish:Ireland12,B
    Irish:Ireland13,B
    Irish:Ireland14,B
    Irish:Ireland15,B
    Irish:Ireland16,B
    Irish:Ireland17,B
    Irish:Ireland18,B
    Irish:Ireland19,B
    Irish:Ireland20,B
    Irish:Ireland21,B
    Irish:Ireland23,B
    Irish:Ireland24,B
    Irish:Ireland25,B
    Irish:IRL001,B
    Irish:IRL002,B
    Irish:IRL003,B
    Irish:IRL004,B
    Irish:IRL005,B
    Irish:IRL006,B
    Irish:IRL007,B
    Norwegian:NOR107,B
    Orcadian:HGDP00800,B
    Scottish:Scotland1,B
    Scottish:Scotland2,B
    Scottish:Scottish1,B
    Scottish:Scottish2,B
    Scottish:Scottish4,B
    Scottish:Scottish5,B
    Scottish:Scottish6,B
    Danish:Denmark1,C
    Danish:Denmark2,C
    Danish:Denmark3,C
    Dutch:Neth1,C
    Dutch:Neth3,C
    Dutch:Neth4,C
    Dutch:Neth7,C
    Dutch:Neth10,C
    Dutch:Neth15,C
    English:English3,C
    German:IL550_0035,C
    German:IL550_0185,C
    German:IL550_0192,C
    German:IL550_0244,C
    German:IL550_0278,C
    German:IL550_0304,C
    German:IL550_0367,C
    German:IL550_0399,C
    German:IL550_0413,C
    German:IL550_0433,C
    German:IL550_0437,C
    German:IL550_0445,C
    German:IL550_0461,C
    German:IL550_0620,C
    Icelandic:NA15755,C
    Icelandic:NA15761,C
    Icelandic:NA15763,C
    Norwegian:NOR101,C
    Norwegian:NOR109,C
    Norwegian:NOR119,C
    Norwegian:NOR126,C
    Norwegian:NOR342,C
    Norwegian:NOR534,C
    Orcadian:HGDP00796,C
    Orcadian:HGDP00803,C
    Orcadian:HGDP00806,C
    Swedish:Sweden1,C
    Swedish:Sweden2,C
    Swedish:Sweden3,C
    Swedish:Sweden4,C
    Swedish:Sweden5,C
    Swedish:Sweden6,C
    Swedish:Sweden7,C
    Swedish:Sweden8,C
    Swedish:Sweden9,C
    Swedish:Sweden10,C
    Swedish:Sweden12,C
    Swedish:Sweden13,C
    Swedish:Sweden15,C
    Swedish:Sweden16,C
    Swedish:Sweden17,C
    Swedish:Sweden18,C
    Swedish:Sweden20,C
    Austrian:Austria2,D
    Austrian:Austria3,D
    Austrian:Austria5,D
    Austrian:Austria6,D
    Austrian:Austria10,D
    Austrian:Austria13,D
    Austrian:Austria14,D
    Czech:CzechR1,D
    Czech:CzechR2,D
    Czech:CzechR3,D
    Czech:CzechR4,D
    Czech:CzechR5,D
    Czech:CzechR6,D
    Czech:CzechR8,D
    Czech:CzechR9,D
    Czech:CzechR10,D
    French:France17,D
    German:IL550_0031,D
    German:IL550_0055,D
    German:IL550_0070,D
    German:IL550_0091,D
    German:IL550_0133,D
    German:IL550_0147,D
    German:IL550_0161,D
    German:IL550_0204,D
    German:IL550_0264,D
    German:IL550_0271,D
    German:IL550_0306,D
    German:IL550_0391,D
    German:IL550_0552,D
    Hungarian:hungary2,D
    Hungarian:hungary4,D
    Hungarian:hungary5,D
    Hungarian:hungary6,D
    Hungarian:hungary8,D
    Hungarian:hungary9,D
    Hungarian:hungary10,D
    Hungarian:hungary12,D
    Hungarian:hungary13,D
    Hungarian:hungary15,D
    Hungarian:hungary16,D
    Hungarian:hungary17,D
    Hungarian:hungary18,D
    Hungarian:hungary19,D
    Polish:Polish6,D
    Polish:Polish12,D
    Slovakian:Slovakia77,D
    Slovakian:Slovakia85,D
    Slovakian:Slovakia94,D
    Slovakian:Slovakia96,D
    Slovakian:Slovakia118,D
    Slovakian:Slovakia150,D
    Slovakian:Slovakia218,D
    Slovakian:Slovakia222,D
    Slovakian:Slovakia233,D
    Slovakian:Slovakia235,D
    Slovakian:Slovakia256,D
    Slovakian:Slovakia411,D
    Slovakian:Slovakia425,D
    Slovakian:Slovakia429,D
    Slovakian:Slovakia474,D
    Slovenian:Slovenian90,D
    Slovenian:Slovenian136,D
    Slovenian:Slovenian137,D
    Slovenian:Slovenian147,D
    Slovenian:Slovenian172,D
    Slovenian:Slovenian184,D
    Slovenian:Slovenian188,D
    Slovenian:Slovenian237,D
    Slovenian:Slovenian241,D
    Slovenian:Slovenian271,D
    Slovenian:Slovenian275,D
    Slovenian:Slovenian299,D
    Slovenian:Slovenian321,D
    Slovenian:Slovenian_8,D
    Slovenian:Slovenian_14,D
    Swedish:Sweden11,D
    Ukrainian_Lviv:UkrLv226,D
    Ukrainian_Lviv:UkrLv240,D
    Ukrainian_Poltava:UkrainePol25,D
    Belarusian:bel23s,E
    Belarusian:bel43s,E
    Belarusian:bel82s,E
    Belarusian:bel110c,E
    Belarusian:belarusian47zp,E
    Belarusian:belorus7,E
    Latvian:latvian54F2,E
    Lithuanian:lithuania6,E
    Polish:Polish1,E
    Polish:Polish2,E
    Polish:Polish3,E
    Polish:Polish4,E
    Polish:Polish5,E
    Polish:Polish7,E
    Polish:Polish8,E
    Polish:Polish9,E
    Polish:Polish10,E
    Polish:Polish11,E
    Polish:Polish13,E
    Polish:Polish14,E
    Polish:Polish15,E
    Polish:Polish16,E
    Russian_Kursk:russianKursk6,E
    Russian_Kursk:RussianKursk9,E
    Russian_Kursk:RussianKursk15,E
    Russian_Kursk:RussianKursk18,E
    Russian_Orel:russianOrjol1,E
    Russian_Orel:RussianOrjol34,E
    Russian_Orel:russianOrjol56,E
    Russian_Orel:russianOrjol78,E
    Russian_Orel:russianOrjol89,E
    Russian_Orel:russianOrjol100,E
    Russian_Smolensk:Russia_Smol303,E
    Russian_Smolensk:Russia_Smol304,E
    Russian_Smolensk:Russia_Smol312,E
    Russian_Smolensk:Russia_Smol345,E
    Russian_Smolensk:Russia_Smol349,E
    Russian_Smolensk:Russia_Smol350,E
    Russian_Smolensk:SM256_Smolensk,E
    Russian_Tver:Russia_Tver442,E
    Russian_Tver:Russia_Tver472,E
    Russian_Voronez:russianVoron101,E
    Russian_Voronez:RussianVoron103,E
    Russian_Voronez:RussianVoron105,E
    Russian_Voronez:RussianVoron107,E
    Ukrainian_Lviv:UkrLv215,E
    Ukrainian_Lviv:UkrLv223,E
    Ukrainian_Poltava:Ukraine94,E
    Ukrainian_Poltava:Ukraine136,E
    Ukrainian_Poltava:Ukraine141,E
    Ukrainian_Poltava:UkrainePol19,E
    Estonian:ee1,F
    Estonian:ee14,F
    Estonian:ee45,F
    Estonian:ee50,F
    Estonian:ee53,F
    Estonian:ee59,F
    Estonian:ee66,F
    Estonian:ee68,F
    Estonian:ee72,F
    Estonian:ee78,F
    Estonian:ee86,F
    Estonian:ee105,F
    Estonian:ee108,F
    Estonian:ee111,F
    Estonian:ee114,F
    Estonian:ee136,F
    Estonian:ee140,F
    Estonian:ee144,F
    Estonian:ee147,F
    Estonian:ee149,F
    Finnish:HG00350,F
    Komi:komi13,F
    Latvian:latvian22J5,F
    Latvian:latvian54A2,F
    Latvian:latvian54H7,F
    Latvian:latvian58C6,F
    Latvian:latvian58C8,F
    Lithuanian:lithuania2,F
    Lithuanian:lithuania4,F
    Lithuanian:lithuania5,F
    Lithuanian:lithuania7,F
    Lithuanian:lithuania8,F
    Russian_Kostroma:Russia_Kostr120,F
    Russian_Kostroma:Russia_Kostr128,F
    Russian_Kostroma:Russia_Kostr138,F
    Russian_Kostroma:Russia_Kostr149,F
    Russian_Kostroma:Russia_Kostr151,F
    Russian_Kostroma:Russia_Kostr170,F
    Russian_Orel:RussianOrjol45,F
    Russian_Smolensk:Russia_Smol339,F
    Russian_Tver:Russia_Tver415,F
    Russian_Tver:Russia_Tver418,F
    Vepsian:vepsa19,F
    Komi:komi1,G
    Komi:komi2,G
    Komi:komi3,G
    Komi:komi4,G
    Komi:komi5,G
    Komi:komi6,G
    Komi:komi7,G
    Komi:komi8,G
    Komi:komi9,G
    Komi:komi10,G
    Komi:komi11,G
    Komi:komi12,G
    Komi:komi14,G
    Komi:komi15,G
    Komi:komi16,G
    Finnish:HG00176,H
    Finnish:HG00177,H
    Finnish:HG00178,H
    Finnish:HG00179,H
    Finnish:HG00180,H
    Finnish:HG00185,H
    Finnish:HG00186,H
    Finnish:HG00188,H
    Finnish:HG00189,H
    Finnish:HG00267,H
    Finnish:HG00268,H
    Finnish:HG00269,H
    Finnish:HG00270,H
    Finnish:HG00273,H
    Finnish:HG00274,H
    Finnish:HG00275,H
    Finnish:HG00276,H
    Finnish:HG00277,H
    Finnish:HG00280,H
    Finnish:HG00281,H
    Finnish:HG00306,H
    Finnish:HG00311,H
    Finnish:HG00312,H
    Finnish:HG00337,H
    Finnish:HG00344,H
    Finnish:HG00355,H
    Finnish:HG00376,H
    Karelian:karelia1,H
    Karelian:karelia2,H
    Karelian:karelia3,H
    Karelian:karelia4,H
    Karelian:karelia5,H
    Karelian:karelia6,H
    Karelian:karelia7,H
    Karelian:karelia8,H
    Karelian:karelia9,H
    Karelian:karelia11,H
    Karelian:karelia12,H
    Karelian:karelia13,H
    Karelian:karelia14,H
    Karelian:karelia15,H
    Vepsian:vepsa1,H
    Vepsian:vepsa10,H
    Vepsian:vepsa34,H
    Vepsian:vepsa46,H
    Vepsian:vepsa55,H
    Vepsian:vepsa59,H
    Vepsian:vepsa61,H
    Vepsian:vepsa64,H

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  15. #508
    Moderator
    Posts
    3,535
    Sex
    Location
    Normandy
    Ethnicity
    northwesterner
    Y-DNA
    U152>L2>Z367
    mtDNA
    H5a1

    Normandie Netherlands Friesland
    For info. I tried to test the reliability of all this, as far as I was able: I ran qpAdm, not on the datas of this PCA ( which I don't have), but on the datas of my own PCA, which are not the same, but likely very close ( a mix of HumanOrigins, Pagani, etc). Just one example, with my dad, who is an uncomfortable case with all calculators. With the cluterized spreadsheet (and Generalissimo's northeuro of course) he gets:
    A: 74.45
    G: 25.55

    I tried first as left pops: French, English, Germans, Komis, and could not get anything ( only unfeasible models, or very low tail_prob). Finally, after many tries, I got this
    dad
    english
    germans
    komis
    chi2 tail_p coeffs
    5.719 0.955797 0.832 0.000 0.168
    5.604 0.93473 0.711 0.118 0.171
    8.777 0.789574 0.000 0.722 0.278

    The first model is indeed very good ( look at the tail_prob!).
    En North alom, de North venom
    En North fum naiz, en North manom

    (Roman de Rou, Wace, 1160-1170)

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  17. #509
    Registered Users
    Posts
    321
    Sex
    Location
    Netherlands
    Ethnicity
    South-Dutch
    Nationality
    Dutch
    Y-DNA
    I2a2a1b2-CTS1977
    mtDNA
    H13a1a1

    Netherlands Belgium
    Quote Originally Posted by anglesqueville View Post
    For info. I tried to test the reliability of all this, as far as I was able: I ran qpAdm, not on the datas of this PCA ( which I don't have), but on the datas of my own PCA, which are not the same, but likely very close ( a mix of HumanOrigins, Pagani, etc). Just one example, with my dad, who is an uncomfortable case with all calculators. With the cluterized spreadsheet (and Generalissimo's northeuro of course) he gets:
    A: 74.45
    G: 25.55

    I tried first as left pops: French, English, Germans, Komis, and could not get anything ( only unfeasible models, or very low tail_prob). Finally, after many tries, I got this
    dad
    english
    germans
    komis
    chi2 tail_p coeffs
    5.719 0.955797 0.832 0.000 0.168
    5.604 0.93473 0.711 0.118 0.171
    8.777 0.789574 0.000 0.722 0.278

    The first model is indeed very good ( look at the tail_prob!).
    Hi Angles
    Congratulations with your qdAdm model; I guess you have felt triumphant.
    While your qpAdm model classified your father as mainly English, the cluster 8 model classified him as cluster A, which is mainly French, with a considerable British component.
    With this in mind, it is instructive to closer inspect the composition of the clusters in posts #506 and #507. Cluster A has 24/25 French, but also half of The English, Dutch and Austrians.
    Cluster B is 40/43 British, but 30/32 Irish, 7/9 Scottish and only 3/8 English, so it is very much NW-British. With this overrepresentation of the Irish, it is plausible that some SE-Brittish will be pushed into cluster A. But wasn't your father born is Normandy?
    Because of the overrepresentation of Irish and Finnish, I think that some tweaking of the cluster 8 model might improve the results. But I want to postpone that tweaking until the next update of the dataset.

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  19. #510
    Moderator
    Posts
    3,535
    Sex
    Location
    Normandy
    Ethnicity
    northwesterner
    Y-DNA
    U152>L2>Z367
    mtDNA
    H5a1

    Normandie Netherlands Friesland
    Huijbregts^^
    Hi Ger.
    Yes my father is half norman, from northern Caux, a village now named "Val de Saane", the Saane being the little river which flows into the Channel in Varangeville, not far from Dieppe city. I did'nt go further in the exploration of my dad with qpAdm, as I was mainly interested by the "komi" affinity. Why does qpAdm refuse the "French" samples? Likely because these samples (all from Lazaridis, therefore likely a mix of HumanOrigins and HGDP) are from everywhere in France, and furthermore you recall certainly that there are many problems of regional classification of the french individuals in Lazaridis' basis. I don't have any dutch sample in my datas, unfortunately, and only 3 german. About my mom, I did'nt post her qpAdm models, as they don't give any new information: she is modeled as a mix of orcadian and english ( roughly 3/4-1/4) with nearly optimal adjusment (tail_prob>0.98 if I recall), and absolutely no west-uralic pop. Her 4.9% projection in the G cluster is perhaps an artefact, after all. Anyway we should not overblow the comparison of these qpAdms and the results of nMonte+northEuro, first because the underlying datas are not exactly the same. My goal was only to ensure that I could get models roughly in the same vein. After all nobody never told that nMonte+PCA could replace qpAdm, only approximate.
    En North alom, de North venom
    En North fum naiz, en North manom

    (Roman de Rou, Wace, 1160-1170)

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